BtaINT0114986 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19405394-19405863:+
Coord C1 exon
chr3:19405394-19405566
Coord A exon
chr3:19405567-19405722
Coord C2 exon
chr3:19405723-19405863
Length
156 bp
Sequences
Splice sites
5' ss Seq
AATGTCAGT
5' ss Score
1.93
3' ss Seq
TTTTCTTTGTTTCTCAACAGGAG
3' ss Score
12.54
Exon sequences
Seq C1 exon
GTGACAATCCGGGCTTCCCGAGGGCAGCCACGAACTGCTCCTGTACCCTCCAGTGATGGACCTCCTGGCAGCTTGCAGGAAGCAGCACCACTGGCCTCCTCAGCAGACCCTCTGCCCGTCTTCCTTTACCCCCCTGTGCAGCGCAACGTCCAGAAGAGAGCTGTTAGGAAAAT
Seq A exon
GTCAGTGCCTTCTGTTGGAGGCTGGGGGCCGGGCGGGCACAGCTATTCCTGAGAGCCAGTGTCATCTGGTAGCCTTTTAAGCAGAGTCTGTTGCCTGAATCTGTACAGTTTGGGGACCCCTGAGGCAGTAATATGATTTTCTTTGTTTCTCAACAG
Seq C2 exon
GAGTGTCATGGGCCGGCAGACGTGTCTGGAGTGCAGCTTTGAGATCCCAGACTTCCCCAATCATTTCCCTACTTACGTTCATTGCTCTCTGTGTCGCTATAGTACCTGCTGTTCTCGAGCTTACGCCAACCATATGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289:ENSBTAT00000033883:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.569 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGTACCCTCCAGTGAT
R:
AGCTCGAGAACAGCAGGTACT
Band lengths:
258-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]