BtaINT0114992 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19389518-19390702:+
Coord C1 exon
chr3:19389518-19389693
Coord A exon
chr3:19389694-19390593
Coord C2 exon
chr3:19390594-19390702
Length
900 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCTTTTGCTTTTTAATGCAGGGA
3' ss Score
8.42
Exon sequences
Seq C1 exon
CTGGCAATTCTTTGGTGCAACAAGGTGGACAGCCACTCATCCTAACCCAGAATCCAGCCCCAGGTCTCGGTACAATGGTTACTCAACCAGTATTGAGGCCTGTGCAGGTCATGCAGAATGCCAACCATGTGACTAGTTCGCCGGTAGCCTCACAGCCAATATTTATCACTACACAG
Seq A exon
GTAAGTAGGACTCTGAATTCTGGGACCTGGTAGAATTCTGGGACTGTGGGAACTGTGGGAACTGTGGCTCTGACTTGAGTCTCCAGCATAATTAGAAATGGTTCTAGGTTCTGTCCTTTGGTCTGGCTTTCTCATTTACTAGTTTTTATTTGCTGCTGACTTCAGTAGTCAGCCCAACATAGCATATAGCTGGGCAATTTCCTCTTTATGCCCCCAGAGGCTGTTAAGTAATTTGATTGAGGTCTAGGCAGGAGAGAGTGGGAAGCTTGCATGAGGAAGAGGAAGCCTTGGTCCTCAAAAGTTCTCACCCTTTGCTTGGGCTACTTTTCTTAAACTGCGGTGAGTTAGTTGACTTACAGAAATATATGTGCAAAATTGGTGAAGTGCAGGGAGATCTTTGAAAGAGAAGGAAGGTGACTTATTTGATATAAATGAGAATTGGAGTTGAAAACCCAGTGCTGGTGTGGGATAAAAAGGCAGATGCTTTTTCCTGCCTTGTCTTACAGATTTCCCAGAGGTGTATGGCCTTTTGAAGTAGACTTTGGGGACAGTTTCCTACAGTTGTTTATGTGTTGAATCACTCCATTAGTGTCAGTTTTTTCCCCATTCTTAGGGGTCAGTTTGTGGATGAGTTTTTTAAACTGAGGTTCTCTTAAGACAAGAACTAGGTTTTCATTTTTGTTCATATGCACCAAACCTCATTCTCCAGTTTTAATATTTGTCACTCAAAAGTTTGCCAGAAGTCCAGAATTTTCTCCATCTCAGTCATTTAAAAGCTCTAGTTCGAGAGAGAGAATCATTAGGTAAGAGTGTGGGAACTTTTTGGACATAGGTCTGAATACAGTCTCTGCTAGTGTTAGCTGATCTCCATGTTAAAGATCCTTTTGCTTTTTAATGCAG
Seq C2 exon
GGATTTCCTGTAAGAAATGTCCGGCCTGTACAAAATGCAATGAATCAGGTTGGGATTGTGTTGAACGTACAGCAAGGCCAAACGGTTAGACCAATTACACTAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289:ENSBTAT00000033883:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.521 A=NA C2=0.338
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAATTCTTTGGTGCAACA
R:
GGGACTAGTGTAATTGGTCTAACCG
Band lengths:
282-1182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]