BtaINT0114996 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021289 | POGZ
Description
pogo transposable element with ZNF domain [Source:HGNC Symbol;Acc:HGNC:18801]
Coordinates
chr3:19395996-19396882:+
Coord C1 exon
chr3:19395996-19396333
Coord A exon
chr3:19396334-19396727
Coord C2 exon
chr3:19396728-19396882
Length
394 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TCCTTTGTGCTGTGCTACAGATT
3' ss Score
9.41
Exon sequences
Seq C1 exon
TACTGTTGCCCAGAAATGGTTGAATACCAGAAGAAAGGAAAATCTCTGGATTCAGAACCCAGTGTCCCATCAGCAGCAAAGCCCCCATCCCCTGAGAAAACAGCTCCTGTTGCTTCCACTCCCTCTTCTACACCTATTCCTGCTCTGTCACCACCTACCAAAGTACCAGAGCCAAATGAGAATGTGGGTGATGCTGTCCAGACCAAGCTCATTATGCTAGTAGATGACTTCTACTATGGACGGGATGGTGGCACAGTAGCCCAGCTCACAAACTTCCCTAAGGTCGCCACATCTTTCCGATGCCCACATTGTACCAAAAGGCTAAAAAACAACATTCG
Seq A exon
GTGAGTGTTGAAGAGCCTTGGAGCTCACCTTGGACAAGTGAAGGCTGAAAGCTGCTTACATGTTTCAGTTTTTCTGTCTGGAGAATGGCCCTAATTATAGCCTCTCTTGCTCAGGGTTATCAAATCAATAACTAATATTACAGGAGATATTGTGATAATAAATAAAAGATAACTTTGGGTAGAGTGAGACCAGTGCATCTCCTTTCTCAGATAAGTTTCGGGAACCCTCTTAGTTTCTGGGCTGAGCAAAGGACTATCCCAAAAAAGAGGAAGTTGGGTGAGAAGGTGGAAGGGGGGACATATGTAAAGTTTGTTCTGTGATTCCACTGTTGTATTTCTCCAAGGCTTCTGATTTTTTATGTTGTCTGTACTTTTCCTTTGTGCTGTGCTACAG
Seq C2 exon
ATTTATGAACCATATGAAACATCATGTAGAGCTTGATCAGCAGAATGGTGAGGTGGACGGTCATACTATCTGCCAGCACTGCTATCGTCAGTTTTCCACTCCCTTCCAGCTCCAGTGCCACTTGGAAAATGTTCATAGTCCCTATGAATCAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021289:ENSBTAT00000033883:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.460 A=NA C2=0.132
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAACCCAGTGTCCCATCA
R:
GTCCACCTCACCATTCTGCTG
Band lengths:
345-739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]