BtaINT0118718 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015045 | PRSS21
Description
protease, serine, 21 (testisin) [Source:HGNC Symbol;Acc:HGNC:9485]
Coordinates
chr25:2243094-2245793:-
Coord C1 exon
chr25:2245510-2245793
Coord A exon
chr25:2243249-2245509
Coord C2 exon
chr25:2243094-2243248
Length
2261 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TTCCCTCAACTCCGTGGCAGGTC
3' ss Score
7.38
Exon sequences
Seq C1 exon
CAACCGAAATCCCTTTCACTGGTCAGTCCAGTTTGGGGAGCTGTCTGCCGCACCATCCATTTGGAACTTGCAAGCCTACTACAACCGTTACAATGTGGACCAGATTTTCCTGAGCCCCCACTATCTGGGCGCTCCGGTGTATGACATCGCCCTGTTGAAGCTGTCCTCCTCAGTCACCTATACTAAGTACATCCAGCCCATCTGCGTCATGGCCTCCATCTCTGAGTTTGAGAACAGGAGTGACTGCTGGGTGACCGGCTGGGGAGACATTGAAGAGGAGCTGA
Seq A exon
GTGAGTCTGGGGACAGACGGGTATGGGCCAGGCGAGGGTGGCAGTGCCATCGCCTGCTGGTTCTAGCTGCACCAGCCTCATGCTGGCAGCCTGCTCAGTGTTCTCTGGATGCTGGCTCTCCACCCTTGCCCCTCGCCCGTAGAGCAGGGCTTTCTGTATGTACCCTAAGCTCCCCTTCTCTTCCGGAGATTGTGAGCCAGAAACCAGAGAGGAAGGCCCAGGCTAGCACCCTCAGCTTGCTGGGTGTCTGTTGGGTGCTGTGGGGGAAGTGGGTGTCTGTGTTTCAGGAAACCCTTCTTTCTACCCCAGCAGGGTGCTCCCCCCTACCCCCTCCATCCAGCCTCCCACTCCAGCTCCCCCACCCCTTCTGCACCGACAGGGGCGGTGGGAGGTGGGAGCCCTCCCATCCTGGAGTGCCAGCTCATTCATTCTCTCCTTGAAACTTTAAGCCTTGCTCCAGCCCTGCTCCCACTCAATCTCTGCGGGGCTCCATGTGCTGGCATTAGTGAAATGTGAAAGTGAAATTGCTCAGTTGCGTCCGACTCTTTGTGACCCCATGGACTGTAGCCCACCAGACTCCTCCGTCCATGGGATTCTCCAGGCAAGAGCCCTGGAGTGGGTTGCCATTAGCTGCCACCCATTTCTGTCTTACCACGAGTCCCTCGAATCTGCTGGGCCCAGGTCCCCCAGAGGGGCTCACGAATTAGACCCCGGTCACACTGCCCCCGGGCCTAGCACGGCCCTTCCTTGCCCTCAACCACAGCAGCCGTGATAGACCAAGCTCCCCTGGTGCACTGTGTGTACCAGGGCTCCAAGGACTCTCTTCCTTCTGAAGTCTACCTGCCAAAGAGCTGGGAGCATCTTTATGCCTGCTTTACAGATGAGGAAACCCGGAGAGGCATGGAGAGTTTCCCAGGCCCTGGGGATCCATGGAGAAGCCAGGGCTCCTTGGCCCAGAGAGAGTAGCCAGCCACACACCTGGCATTGCCAGTGAGGAGAAGGGAGTCGACTGGCCCTGTCCTTTCCTTGCACCCCAGGGGGCTGGAGAAAGGGCCCCAGTGTAGACTTCTTGGGCCCAAGGGCTGGATGGCCGTGAGCTGAGGGGCCCAGCCAGGCTGACACTGCCCCTCCCCCAGCTGACAGGCAATCACATCCAGCGCCAGCTGAACCCTCACTCCGACAGGTAGAAGGTGACTTCTTGACCCCACCCCCAGAGCTGATGTACTCTGTACTAGTGGGGAAACCTTGGGCAAAGCACTTCATCTCACTCTGCCTCACCTTCCACATCTGTAAAATGGGGTAATAATAGTTCCCACCAGAGAGGGTAGTTCTGAGGCTTAAAAGCATTCCTACATGAGGGCTTAGCAGAGCGCCTGGAAGTCAAGAAACGATTGCTTCAACAGCTTTCAGTGTTAATGGGATCACCATCCTCTGCAGGACAAGGAGATGATTCAGTTCTAGACTTTGGACAGGCCTGGCTTCATATCAGGGCTTCCCAGGGGGTGCTAATGGTAAAGGATCCGCTGACCCATGCAGGAGACATAAGAGACCCAGGTTTGATCCCTGGGTCGGGAAGACCCCCTGGAGGAGGGCATGGCAACCCAATCCACTATTCTTGCCTAGAAAATCCCATGAACAGAGGAGCCTGGTGGGTCATGGTCCATGGGGTTGCAAAGAGTTGGACACGATTAAAATAACTTAGCATGCATGGGTTCATGTTAGGCTCTGGCAGCTCCTGGTGCTTTGCTGGGGTTGAAGGAGGGTGACCTTCCTCCTGAATCTTTCCTTACCCAAGACCAAGGTTGATTACACTGCATCCCAGGGATGCTGCAGGAGCACCTGGTAGAGCTCTGGGCTCGGGCTAGGCAGGCTTGTTGCAGGGGGAGAGAGAGCACGCCAGGCTGCCCCACTCCCACAGGCACTGGACGCTGGACTGTGCAGATCCTAAACCATCCCAGCTGCACCAGCCCCACCCCGGAGTGCTAAGGTCTCTCCCTGGGGGCTGGAGCAGGGCCTATTTTCTGCAGGCTGCAGTGAGGGAAGCTGTAACAGCCAGTCCCTCCTCTAGGCCCTTCCGTGGTGTGTTCATCACCCACCACGTGCTGGGTGCTGGGCTAGAGCAGAGGAGTCAAGGGCAATGTCCCAGGTACTGTGGGTGCCCCAGGGTCCCCCCGCCGCATGCCTTTGTAGCCTGTGCCATTCTGATGGCAGAGGAGAGGCTCAGGACGCCATCTTTCTCTGTTCCCTCAACTCCGTGGCAG
Seq C2 exon
GTCTGCCATCTCCCTACACCCTCCAGGAAGTGCAGGTCGGGATCATAAACACCACCATGTGTAATCACCTGTTCTCAATGCCCGATTTCCGCATTGACATCTGGGGAGACATGATTTGCGCTGGCGAGCCTCAAGGCGGCAAGGATTCCTGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015045:ENSBTAT00000064680:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(21.4=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]