BtaINT0118784 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005019 | PRSS50
Description
protease, serine, 50 [Source:HGNC Symbol;Acc:HGNC:17910]
Coordinates
chr22:53340375-53341792:+
Coord C1 exon
chr22:53340375-53340537
Coord A exon
chr22:53340538-53341508
Coord C2 exon
chr22:53341509-53341792
Length
971 bp
Sequences
Splice sites
5' ss Seq
CGAGTGAGT
5' ss Score
8.49
3' ss Seq
TCCCCTTGCCCTTCCCCTAGGAG
3' ss Score
11.66
Exon sequences
Seq C1 exon
CCTGCGGCTTCTCCTATGAACGGGACCCCACCCTCAGGGATCCGGAGTCCATGGCTCGGCGGTGGCCGTGGATGGTCAGTGTGCGGGCCAATGGCACACACATCTGTGCAGGAACCCTCATTGCCTCCGAGTGGGTGCTGACTGCAGCCCACTGCACGACCGA
Seq A exon
GTGAGTCGGGGCCTAGACAGACGGGTGGAAAGTCATGTGGAGCCACCGGGGCTTCAGTCATTCTGCCGGCTGGCCCATCAGTGGCTGAACCCCATAATCCCAGCCTCACCCCAGCTCCTAGCAGGGTGGAGCTGAGTCCTGTAGATTCCTTCCTAGGAACTGGAGGCTTGCTCCCCTCATCTGATGCCCTAGTCCTGTGCAGTCATTCCACAGATAGGAAACGAAGACTTGCAAAGCACTGTCTAGGTCTTCCTCCTGTGCACAGAAAGAAGATTCTAATTCTTCTGTTCCATACCCTTCGTTTCACTTATTCCTTCCTTCCTTCAACCAGTAGCCTTGACAGTCTTTGAAGCCAGGCCCTGGCCTGGGCACTGGTAGCTGAAGAGGGCTGCCCCACTCCTGTCAGGTTGCTGGGGAAGACAGACAAGAATATAGATGCTCACAGTCTGGTCAGTGTGGGGACAAGAGAGCAGGCGTGCCTGTGGTCTGGAGCCAGGGGGCGACCCGAGGGTCACATCTGGCCATGAGGGCTGGCCAGAGGAGAAGTGATTTCCACGCCTAAAGGACACACTGAGAAAGAAAGCTAGAGGGAGGGTTGGATGATTGCACAAGGCCTCTGTCACTCCTGGGACCCAGCATGGGTTACTGGACAGAGTCTAAAGTTTGGAACCAGAGAAAACTGGGTCCACATCCCACCTCCACCACTTGCTAGCTGTGTAGCCTTGAGTCAGTCACTTGAGTCAGTTTCCCTCTCCATAAACTGAAGAGTTGTTGTCAGGACTGACCACACGGTGTCTGTGTGTGCAGGGCCCCATTCACACCTGCCCTGAGAAGTGGGCTCGGGGACTCGAAGCAGGTGGGTGGCTTGCCTGGATTTGCTCAGAGTACAACAGTGTGGTGGAGTTTAGCGGGGTGCAGGCTGGTGTGGGGTTCCTGGGACTAATGGAGGACTCCCCTTGCCCTTCCCCTAG
Seq C2 exon
GAGTGACGTTACCTATTCAGTACGGGCGGGGAGTCCGTGGATTGACCGGATAACGAAGACTTCCATCGACATCCTGGCAAAAGAGGTCATCGTGCACAGCCGTTATCGAGCCAGTCGGTACTGGTCCTGGGTTGGCCGGGCCAACGACATTGCCCTCCTCAACCTGGATCGGCCAATGCAGTACAGCAAGTATGTCTGGCCCATCTGCCTGCCTGGCTTGGACTATTCGGTGAAGGACTACTCGCTCTGCACTGTGACAGGCTGGGGACTCCCCAGGGTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005019:ENSBTAT00000055134:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(17.2=74.5)
A:
NA
C2:
PF0008921=Trypsin=FE(39.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCTATGAACGGGACCCC
R:
ACTTGCTGTACTGCATTGGCC
Band lengths:
346-1317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]