BtaINT0119603 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015074 | PTGDS
Description
Bos taurus prostaglandin D2 synthase 21kDa (brain) (PTGDS), mRNA. [Source:RefSeq mRNA;Acc:NM_174791]
Coordinates
chr11:106247577-106248104:-
Coord C1 exon
chr11:106248079-106248104
Coord A exon
chr11:106247731-106248078
Coord C2 exon
chr11:106247577-106247730
Length
348 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GGTCCCGCTGTCCTGCCCAGGTG
3' ss Score
7.33
Exon sequences
Seq C1 exon
ACAAGTGCATGGAGGAGCACCCATAG
Seq A exon
GTGAGTGGGGGGCTGGGGGCCACCTTCACCCAGCAGCCCCCTCACTCGTTCATTCAACACACGCTCACCAACAGCCTCCCTTCTGCCATGAGGGCTGGCCTCCGGCTGACAAGGGCTGCTTCGCGGAGGGGCCTCCGCTGGGGTTCAGCAAGGTCACTGGGAGCGGGCGGAGCGGGCGGCCGGGACAGGACTGGGGTGGGAAGACCAGGGGACGGCAGAGGAGGCCGGTGCCCTTTGCTGAGAGGCCTCAGTGGAAAGGCCCTCGCGACCTGAGACTGGAGGGGGCTGGGGTCCTGGGGTGGGGGGCCTGTGGCCAGCCCCACCCACAGGTCCCGCTGTCCTGCCCAG
Seq C2 exon
GTGAGTCTGCCTCTCAGGACCTGGCCCTTCTGCCCTGCTCAGCCGTTTTCTGCAACACCCGAGACCCCAGCCTGAGACCCCAGCCCCGGCCCCTCGCCATCCATGCCCCCCTCAGCCTTTATTCCCGCTCTGAAAATAAACTCTGAAGCAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015074:ENSBTAT00000020065:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(0.1=0.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development