BtaINT0121062 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011129 | QSOX2
Description
quiescin Q6 sulfhydryl oxidase 2 [Source:HGNC Symbol;Acc:HGNC:30249]
Coordinates
chr11:103757580-103758556:-
Coord C1 exon
chr11:103758466-103758556
Coord A exon
chr11:103757726-103758465
Coord C2 exon
chr11:103757580-103757725
Length
740 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
CGTGCCGTCTCATCGCCCAGGTG
3' ss Score
8.88
Exon sequences
Seq C1 exon
GCCCAGTGACGTCCTTTCACTCATCGACAAGCGAGGTGACCGGTACGTGGCTGTGCTGTTGGAAGATGACAGCTCCTACGTCGGACGCGAG
Seq A exon
GTACTGTCTGCACCCGTCTCGTGTCGGCGCTGCGGTCAGACTCCGTGACAGTAGCGACTTCCGCCTCAGCTCTTGGAGTGTGTGTTCTGCACTCATTAATTCTCGGAATTGCCCATGTGTTATTCAGCAGACTCACTAGAGAAGGCTCGTTTACAGAGAAGACCGTTGGGACGGGTTGGGGGGCTGCCTCCCAGAGGAGACAGAAGCAACTCCCGCCTGCCGCCGCCTCCCCTGGGGGGCCAGGTGGGCTCACGGCGGACGTGGTCCCCGGGACACACAGCGTCCCTGAGGGTGTCCTCTGTCCAGTAGGCGTTATGGTCCAGACTCTCTCTGCTGTATTCTGGACTCCCAACTTTGGCAAATCCAGTGCCCTTCAGCTGGCTGACCGGGAGGGGTGCTGTCAGCCTCCCAAAGCAAGCCCTGTGGGTGGAGGGGAGGCTGGGGCGTGGCCCCCACTCGCCTGGGGGTGACCGGCCCCGTCTGATGGGGTGGGCTTTGGAGGGGGTGTGGGGAGCACAGTTCTGACCCCTCTCAGGGTCTGCACAGCTGCTGCTCTTCCTGCCCTTGCAGCCCCGGGGGCCTGAACGTGCAACACAACAGGGGTGTCAGTGGCGGTCGGCCTTAGGGAGCAGCTGAGCTGAGAGGCTGTTAGTTTCTGTAAGAAGGCACGCTCGTCAGCGTGGCGTTTCCTGTGGACCCCGCCACCCACCAAGAAGGTGACGTGCCGTCTCATCGCCCAG
Seq C2 exon
GTGATCTTGGACCTGATTCCATACGAGAGCATCGAGGTGAGGCGGGCGCTGGGTTCCGACACAGCCTTCCTGCAGAAGCTCGGCGTGCCCTCCCTTCCCTCCTGCTACCTGATCTACCCGAACGGGTCGCACGGACCAGTCACCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011129:ENSBTAT00000042859:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGTGACGTCCTTTCAC
R:
GTGACTGGTCCGTGCGAC
Band lengths:
234-974
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development