BtaINT0121559 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015098 | RABEPK
Description
Bos taurus Rab9 effector protein with kelch motifs (RABEPK), mRNA. [Source:RefSeq mRNA;Acc:NM_001035399]
Coordinates
chr11:96103971-96108089:+
Coord C1 exon
chr11:96103971-96104123
Coord A exon
chr11:96104124-96107927
Coord C2 exon
chr11:96107928-96108089
Length
3804 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CTACCTTCTCTCTGGACCAGATA
3' ss Score
8.02
Exon sequences
Seq C1 exon
GAACACACCAGTGGGATTTAGCCACCTCAGAGGGCCTCCTGCCCCGGTACGAGCACACCAGCTTCATTCCCTCCTGCACACCTCACAGCATCTGGGTGTTTGGAGGGGCCGACCAGTCAGGAAATCGAAACTGCCTGCAAGTTCTGAATCCTG
Seq A exon
GTAAGTAGCTGATGGTTATTTTATTTACAAAAATGAATAAGTAAATCCAATTTCCATTCCTGTACCAAAGTCCCATTTGGATTTTACTGACTGATCCATTTAACCTTTGCTAACCTCATAGAAAAATAGACATTTCCACTTCGAATAGAATCTGAAAATCATAAATGATATTTTGTTTTCCTCCTAAGTTGCACAAAGTATCAACTTCTGAAAAGTCAAAGCTGAAAGAGACTTCAGAAAACAGTTATGCCAAGTGGGCAACCTGGTCTAGCGACGGGGGGTGACTTTCCTAAAGTCATCAGGGAATCAGAGCCTTGAGCAGGCTCGAATCCGAGTCACTCTATCAGAGGTCTCAAATGGGGGTGATTGTGCCCGCCAGGAGACAGTTGGCATGTTGCACCTTGGGGCAGGGCATCTAATGTGTGGAGGCCAGAGATGCTACCATACATCCTGTAATGCAGTGGTCCCCAACCTTTTTGGCACCAGGGACTGGTTTTGTGGAAGACAAATTTTCCATGGACAGGGGTGGGAGCGGGGTGGGGTCATGGTTTGGGGATGATTCAAACTTATTACATTTATTGTCACTTTATTTCTATTATTATTACATCGGCTCCACCTCAGATCATCAGGCATTAGATCCTGGAGGCTGAGGACCCCTGCTATAATGCATAGGGCAGCGTCTCACAATAAAGAATTGTCTGGTCTAGAATGTCAATAGTGCCAAAGTTTAGAAACCCTGCTCGAGATCCTCTTAGTATGTTTCTTTTAGCCAAAAAGTACAAAGTTCCTGACTCGTCTCACTGGCAGTTTTGTCACAGAGGAAGCAGTTTGGGGACATCACTGCTGCAAGGATGTTGCTGAGCCACCCATGGGGGTGGACCTGACTTTCTGTCAGTTAGAAACACTTTTTTGTTGTTTTGCTCTTTGTAAATTTTTCAATATGCATTGAAAAATGTCTAAAAAGTGTAAATAAGTGGACAAAAGCCATCCACAATCCTATGATATTAAGGTTATTAATATCAATATATTAATATCAATATAAGGCTATATTGCTATAGCCTATATATAAGGCTATTAATATTAATAACAGTTCTGTGTACTTCCTTTCTGTCTTTTCTCTGCATTTTTGTAAACCTGAGATCTTTGTATTTTACCATTACACTGTTGTGTCTTTTTAATTTCATAATTAGCACAGAAATGATTCCCTATCAACAAAGCTTTGCTAAAATCATTTTTAATGGCTGTATAACACTCAATTTTATGATGATACCATAATTCCTCTGTTTTTTTTTTTTTAACATGTAGGCTGTCTTCAGATTTCTATCATTATAAATAACAAAGTAGTGAATATCTTTGTTCAGAAGTCATTGAAAATGTATTTCAAATTATTGCCTTAGAATTCATGCCCAGAAATAAAAGAACTAGATAAAACCCTGGACTTTGCTTTTTTTGTTTGTTTGTTTGTTACTTTAAGGCTTTTAGTACATGCTATCAAATTGTTCTCCAGGAAGACTTTTTTTAATTTTCTTTTTTGGCCACATTGCACAGTTTGTGCAATCCCAATTCCCTGACCCAGGATTGAATCCGGGCCCAGAGAGTGAAAGCCCAGAATCCTAACCACTAGGCTACCAGGGGACTCCATCTCTAGAAGGATTTTTTTCAACTTATCCTCTCTCCAATTGTGTTTAATAGTTCTTGTTTCACTCCTGACTGGCACTGAATTTATCATGTTTAAGCACTGCTAATTTGATGGGCAAAAGTAAAAAAACACAAACGATTGTATCTAATTGTTTAAATATGCAGTTTGTTCATTACTAGTAACCTGGACATTTTTCATGTAACAGTCAGCTCTTGCCTGGTTACCTGTGTCAACGATAGGTTTACTTGTATAACAGTTGGTCTTCTTTGTCATTCTGGGACAGTAATAATTTCTATCTTGTTAGGTTTGGCAAGAATTAACTCACGTCTGGCTCATAGTTAACATTCAGTAATTGTTGTGGCTGATGTAGCTATGGTTTGACAGATGGAAATCAGTTCCAGAGCCCTGGCCTCTCAATTTTTCAGTGATGGCATCTATTTTAAATAAAATACAGTAAGAATTTGGAAAGCTTCTGTCAAAGAAATTGACTTTCCACCAGATCCTTTCCTGTCCTGGAAAGTATAGTTTGACACCATGACCAAGAAATATGAATGATATAAGTGCATCATTAATTTCTTGTGTTACTAAGGCAAGTTCCTCAGTCTTAGGATTCCTTTCTGATTATTTGTGCTAGCATTTGACTTGGCAGCCACACAATCTCAATTTTATGACAGTACCATAATTCCTCTGTTTTGTTTTGTTTTTTATTCTGAAGGTTGTATGCTTTCTAACTCCTCCTAAGATCTAAAAGTTCCCCAAGATCTGTAGCTATAGAGGCAATTACATTATGCTTTGTTATTTCAGCTTTTAGTTTTTGTTGTTTGTTTTTTTTGGCTATGAAGTTTGTGGGATATTCGTTCACCAACCAGGGATCGAACCCAAGACACCTGCAGTGGAAGCCCAGAGTCTTAATCACTGGACTGTCAGGGAAGTCCCCATTATCCTTTGGATATAGGCTGAGACTTGTTTGGTCTCCAGGTTCATGTTTTGAGTCCCACACATACTACAAATGCTTCATGCACCACTTTGTATATTGAATGAAGACCTTTACACGAGACACAGAATTTCCCAGTCAAGAAATAATTCCTGGGAATTCCCTGATGGTCCAGTGGTTAAGACTTGGAGTTTTCACTGCCGTGGGCTCGGGTTTAAGCCCTGGTTGGGGAACTAAAATCCCACAAGCCATGCAGCATGGCAGAAAGGAAGGAAGGAAGAAAGAAAGAAAAGAAGTAGTGGAATGACTGTAGGAGTTTTGACAGATCTGTATTCAGAGCCCTGCCCTACTACTCACCAACACTGTGACTGGGGGAAAGGATTTAAACTTTCTGAGCTTCAGTTCCTTCATCTGCCAAGTGGGGATACTTTCCACCTGCTCCCAGGATTGCCCGAGGATGATGGAGATGGTGGCGTGCTCAGGGCAGTGATTCTGCCCACAGAAGGTGCTCAGTTACCGCTTGTGTTTCTGTAAAATGTGTGCTTCCTTTTGAAAAAAAAAATGAGCTTCTGTTCACCCGCCCAGGTGGTAGAACTTCATTCTCAAGTCAGAAGTGTGGAATATACATAGATCTTGATGTTGAAATGGAATTTGAATTCCAACTCAGCCATTTACTGGTCATGCCATCTTAAATGAGTGACTTAATCTATCTTTGCTTCAATTCCTTATCTGTAAATGGGGGAAGAAATATTTATTTGGCACATAGTGTTTAGTGGGGACAATTACTACTACTACTATTACAACTACTACTACTACTAAGACTGTAATGATATTGTCCACTTTTTTTTAATGGCCACATATCCTGAGAAACATATCCTGCTTTCTTGCACCCAGTGGGAATGAGTTTGCTCAATGTTGGGCTCCTCTGGGTGGGCACAGGGCAGGATAGTCAGCAAAGGGGAATAGGGTGCAGAAAGGATGTTTAATGCTTCCAAAAACAAATTGTCCTCCTTAATTATACCTGTGGCTTTTCACTCGTGAGAATTTGGGTCTATCTGGACACATTCTGAGTATTGTCCCCTACCCCTCCTTGAATTTGATGGCAGGAGATCCCTGCCTAGACCTACCCTGTCCCTCTTGGGGATTGGGGTTTGCCAAGTGACCCTACCCAGCCTCAATGTCTGAGGCCCTCAGCCTGGGGATTTAGATGCCTACCTTCTCTCTGGACCAG
Seq C2 exon
ATACCAGGACTTGGACTACCCCAGAGGTGACCGGCCCACCGCCATCCCCAAGAACTTTCCACACGTCATCGGCAGCCATTGGAGACCAGCTGTATGTCTTTGGGGGCGGAGAGAGAGGTGCCCAGCCCGTGCAGGATGTGCAGCTTCATGTGTTTGATGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015098:ENSBTAT00000020093:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.473
Domain overlap (PFAM):
C1:
PF0764610=Kelch_2=PD(20.8=21.2),PF134151=Kelch_3=PU(46.9=44.2)
A:
NA
C2:
PF134151=Kelch_3=PD(51.0=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development