BtaINT0123205 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023891 | RBM20
Description
RNA binding motif protein 20 [Source:HGNC Symbol;Acc:HGNC:27424]
Coordinates
chr26:31629816-31630788:+
Coord C1 exon
chr26:31629816-31629907
Coord A exon
chr26:31629908-31630690
Coord C2 exon
chr26:31630691-31630788
Length
783 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TTGTGTAATTTACCATTCAGATT
3' ss Score
6.94
Exon sequences
Seq C1 exon
CGCTGGTGTGCGGTGTGTCCTCGGTCCTGCAGAGGGAACACTGTGTGGCTCTCCCAACAGCACAGCCGTTTATAACCCTGCTGGGACGGAAG
Seq A exon
GTGAAGAGGGGCCCACGGGTCAGCAGCTTGAAGCAGAAAGCAGTTTCCCAAAGGCTTCTTTCCTTTTTTTTTAAGATTTTTTTTTTTTTTTTTATGTGGACCATTTTTAAAGTCTTTATTAAATTTGTTACAGTACTGCTTCTGTCTTATGTTTTGGTTTTTTGGCCGAGAAGCATGTGGGATGTTAGCTCCTCAACCAGGGCTTGAACCCAACCCCCCTGCATTGGAAGGCGAAGGCTTAACAACTGGACTGCCAGGGAAGCTCCCTCCCAAAGGCTTCTTGTGCCTCATCTTTACTAACCAAATGTCCCCGATGTGCCCTCCTTAGACGTCTGTAAAGCAAACAGATCCCAAGATGCTAAGAGGCATTGGACTTGCTCTCTGGGCTCTTTGATGTTTTCTACGTGTTTTAGACCTAAAGCTTTGCTGGTTATCAGCACACTCAGAAGTATAATCATGCCAACCACTAATCACTATATTAAAAGGGAATTTTCACTTTTCCTTTCCCACTTCTGTCCTGATAATGACTTTTGGGGGGGTGGGGGTTAACCCAGTTATTTATTATTATGTTTTTCTTACAACTTTTAAACATTTCTTTTGAATGATTTATTTCAAGAAAGAAAAGCTAACTTTAATTATTTTTAAAAAGAACATTTGGCCAAAAAGTCATTGTTATTTTTAAACAGGGGGGGAATGACTCTTGCACATATCCATAAACAAGGACTTCTGAAGGTCAAGGAAATGACTGGGTTTTCACTTGATTTTGTGTAATTTACCATTCAG
Seq C2 exon
ATTACTCCTCAAACCTTGGAACGTCATACGCGGCCATTCCTGCGAGGTCGTTTACCCAGTCAAGTCCCGCGTTCCCTTCAGCTTCCCCAGGGACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023891:ENSBTAT00000046225:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGTGCGGTGTGTCC
R:
TCCCTGGGGAAGCTGAAGG
Band lengths:
183-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]