BtaINT0129894 @ bosTau6

Intron Retention

Gene

ENSBTAG00000001352 | SDCCAG3

Description

Bos taurus serologically defined colon cancer antigen 3 (SDCCAG3), mRNA. [Source:RefSeq mRNA;Acc:NM_001046140]

Coordinates

chr11:103912598-103913019:-

Coord C1 exon

chr11:103912908-103913019

Coord A exon

chr11:103912661-103912907

Coord C2 exon

chr11:103912598-103912660

Length

247 bp

Sequences

Splice sites

5' ss Seq

ACTGTGAGC

5' ss Score

4.2

3' ss Seq

TTTTTTGGTCGGGGAATCAGAAA

3' ss Score

0.37

Exon sequences

Seq C1 exon

GGTGAGGACGCTTGAGCGGAAGTTAGAAGCGAAAATGATCAAGGAGGAGAGTGACTATCACGACCTGGAGTCGGTGGTGCAGCAGGTGGAGCAGAATCTGGAGCTCATGACT

Seq A exon

GTGAGCAGCCAGGGCCCTTGTTTGCAGCGGAGAGGTGGGCGGGCCTGCCTGGCCAGACGTCGTGAAGCGTCGGGTGCCGCTACCTGGGGGGCCCAGGCCGGGGCCATGAGCAGGGGTCCCTCCTATGGGCTGCCCAGCCGTTGGGCGGGCCCGCCAGGTGACGGGGACGGACGGGAACAAGGGGATGTGCTGTGTCCAAGCTGCCGTGTCAGTGATGGCTTTTTTTTTTTTTTGGTCGGGGAATCAG

Seq C2 exon

AAACGTGCAGTGAAGGCAGAAAATCACGTCCTGAAACTGAGACAGGAGGTCAGCTTGCTCCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000001352:ENSBTAT00000055628:6

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.204 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF041569=IncA=FE(23.0=100),PF079026=Gp58=FE(21.4=100),PF131661=AAA_13=FE(25.5=100),PF0076914=ERM=FE(23.0=100),PF057016=WEMBL=FE(25.0=100),PF0026115=Tropomyosin=FE(31.6=100),PF149321=HAUS-augmin3=FE(24.8=100),PF107214=DUF2514=FE(37.4=100)

A:

NA

C2:

PF041569=IncA=FE(12.4=100),PF079026=Gp58=FE(11.6=100),PF131661=AAA_13=FE(13.8=100),PF0076914=ERM=FE(12.4=100),PF057016=WEMBL=FE(13.5=100),PF0026115=Tropomyosin=FE(17.1=100),PF149321=HAUS-augmin3=FE(13.4=100),PF107214=DUF2514=FE(20.2=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSBTAP00000049441