BtaINT0133004 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046548 | SIAT7B
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 (ST6GALNAC4), mRNA. [Source:RefSeq mRNA;Acc:NM_205791]
Coordinates
chr11:98594165-98594798:-
Coord C1 exon
chr11:98594678-98594798
Coord A exon
chr11:98594251-98594677
Coord C2 exon
chr11:98594165-98594250
Length
427 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
GAGTGTCTGGGTCTTGGCAGGTC
3' ss Score
6.72
Exon sequences
Seq C1 exon
CGGCGACGGCGACGCCTCAGCGCCGGGGCTCCGGCTTCCTGCCCCGTCCGTCCCGCCCGCGGGCCATGGAGCTCCGAGTAACGGATGGGGAGCAGCCGGCGCATCCCCGCCTGCCCTCCAG
Seq A exon
GTTAGCGCCCCAGCGGGTGAGGGGTCGGTGGGATCTGGCAGTGGGGTGGAGAGCCCTTGTCCCCTCCAGCCCCAGGCCTCTCTGTTAGTGAGTTGGGCGGAGATGGGAGTCAAGGCTCCAGGCTCCTGGTGCTTATCTGACCCAGAGTGGATGGGGTGGCCTTGAGCCCTGGGCTTCTCATGTCTACCTCTCCTTCCCCGTGTGTGCAATGGGGACTGGGTTGGCGGGAGGTTTCAGCTCCTTTAGGAAGAGATTACAGCTCCTTTAGGATGGGGACAGTGCTTGCCCCGTGTTTGGGGACTTAAGGGCGTATGATTCCCAGAAGCCGTCTGCCCTGACCCAGGCCTGTACCCTCCCCTCTCTCGGTATCCCTGGGCAGTTTCCTCGGAAGCCTGGGACCCAGCTCTGAGTGTCTGGGTCTTGGCAG
Seq C2 exon
GTCCCTGGCTCCCATCCCTTCCCAGCCTGATCCCTGGAGGCAGCAGCCACGGGCTACTGAGCGGCAGTGACAGCATGAAGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046548:ENSBTAT00000064279:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development