BtaINT0135566 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007650 | SLC38A11
Description
Bos taurus solute carrier family 38, member 11 (SLC38A11), mRNA. [Source:RefSeq mRNA;Acc:NM_001031760]
Coordinates
chr2:31392624-31394979:+
Coord C1 exon
chr2:31392624-31392741
Coord A exon
chr2:31392742-31394904
Coord C2 exon
chr2:31394905-31394979
Length
2163 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TGGCACATTTTTTTTTCCAGGAT
3' ss Score
9.06
Exon sequences
Seq C1 exon
AGCCATCGAGATGACAGAGAAACCCTGGTTTCTGAACATAAGCACAAAGGGAAAACTTGTCGTCAGTCTGCTGCCGTTTTTAATGTTGTCAACTCAATTATAGGGTCTGGTATAATAG
Seq A exon
GTAAGTGTTTTTTTGTTTTGTTTTGTTTTTTTAATTTTTCAATGAAAAGGCCAAATTTAAGACATTTATTATGTTGCTAGTATTCATAGATTATTTTTAAAGGAAAAAAATTTAAATTATAAAATTGGTAATTTTTTTTTTCGTAAAAGCCTTCCTGTTTTCCGGTGTGCACACCATCAGTCTTTTATACTAAAGATGGGGTGGCAATTCACACACTGTTTCTACATTTGAGAGTATCCTCCGTGTGTGGTAGATTAAGGTGAAGCTGCAGATGGAAGATAACTAAAAAAATTTTTTCATGGGCTGTATATCAGTTGATAATGTTACCAAGTTTACTTTTTTCCCTGTTTCTGGAATGTCTACTGTTACTTGAATCATCTTTCTATAACCTTTTGGAGGTGTAAAACCTCCAGATATTTGAATATATTGCAGATACAAAACTTTAATGTGAAATGTAGCAATCTTGTGAAAAATCAAATCCATGTAATATTTCCTTACCCATTCAAAAAGTATTAAAATTTAAAGTCCAAACTTATTGTGATATATTAATTTTAACTGTAATCAATAAATAGAAATTGTTTTTAAATGGATTTTTAAAACAAAGGAGTCAAGTAATCCGAATTCAAAGAAATGAGCAGCTCATATTTTCCCAGTCTGAAGCCAGGGGTAAATTTCTGGCAAAATTAAGTGTATTACATTATAATAATAAAGGCAGCTTTTTTTTTTTTCAGTGCTTCTTATTCTTTTTGTTATTTGAAAACATCCAATTTAAGGTAAAACTGAGACAAATCAAAATCCTTCAGATGCTCCTTGAGACTATTACTTTTTCTCTGTAATGTTTTGACATCTTAGTCACAGTCATCTGGATTGAGTTACTTCTCTTAACTTTCTCAAATTGATGTGTTTCTTGATTTTATTTTCCATATATAGACAATTTTTTTCATATGGTAGATAAAATGTAGGAACTGACACAAAGTAATAGCAAGTAGGGGCAAAGATTTGTTTGAAATTCTGCCTCCATGTGCCGTGGAGGTGTAGGCAGAATCCCAGAGTTAATTCCTAATATGAATACTTGAAGCTGATCCATGTCAGCAACATTGAAAAGTACCTCTTAATTAGGCTCAGCAGATTTTTTAAAGGGGAAGGTTTTCAGGGAATAAAGCATTCTGGATGGAAATAGTTTATGTACATTTTATTTTAAATTTTTCATTGTACATAATCTAAAATTCCCCATTTCCCCCCAAAAAAAGTTTATAATAAATAATGTTATATACTCACTTCAGCTTTATAAAAAATACCTTTGCCTACTTATTTTTCTCTCCTTTTCCTACAGAGTTGCCCATCTTGACCCCAGAGTTAGTCTTTCCTCGAATCTCATAACCTTTCTATTCTTTATTTTCTAAGACTTTTTTTTTTTTTTTGGTGTGGACCATTTTTAAAGTTTTTATTGATTTGTTACAATGTTGCTTTTGTTTTATGTTTTGGTGTTTTGGCTGGGAAGTATGTGGAATCTTAGCTCCCTGACCAGGGATCAAACCCATACCCTCTGCATTGAAAGGTGAAGTCTTAACCACTGGACTGTTGGAGAAGTCCCCCAAACCTTCTATACTCATCATTGTCTCTGTTTTCCCAGCCAGCCTGTAAGGAGAGCTCTGAGTCATTACTCTCCACATATTCTAAGTCATCTGTCCCCGCACCCTGAAAGTGAGAGTCGCTCAGTCATGTCTGATTCTTTGCGACCCCATAGACTATACAGTCCATGGAATTCTCCAGGCCAGAATACAGAAGTGGGTAGCCTTTCCCTTCTCCAGGGATCTTCCTAACCCAGGAACTGAAACCAGGTTTCCCGCATTTCAGGCAGATTCTGGTAAAACCCCGAAATGAACATTATTTGTGTGAATTGGCATCTGTTTATCATGTGATGCTTTCTTATCATATTCTTCTACCTCATAAACTCACTCTGTTGACATGTCCTTAATTTACAACATTTTATTCTGTAGTAAATATTAATATGCTAACATTTAATTTTAGTATTCATATGCACTGTTTACAACTATCTCATATAAATATGTTAATATTCTTAACTGATTATATACAGTAATTGGGGAAAAAACCTATTTGTATGTTTTATTCATGTGATGGGTGGCACATTTTTTTTTCCAG
Seq C2 exon
GATTGCCTTATTCAATGAAGCAAGCTGGCTTTCCTCTGGGAATATTGCTTTTATTCTGGGTTTCATATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007650:ENSBTAT00000010065:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PU(42.3=55.0)
A:
NA
C2:
PF0149013=Aa_trans=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]