BtaINT0136067 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108273128-108273680:+
Coord C1 exon
chr2:108273128-108273178
Coord A exon
chr2:108273179-108273517
Coord C2 exon
chr2:108273518-108273680
Length
339 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
AGAGGCTGCTGGGTCTGCAGGTC
3' ss Score
3.77
Exon sequences
Seq C1 exon
ATGGCCAACGGAGTGATCCCGCCACCCGGGGGCGCCTCCCCCCTACCCCAG
Seq A exon
GTGACTGATGCTCGCGGGGGTGGGAGAAGAGGAGGGGGAGGGACCGCAGGAAGAGGCGGGGGTGTCCTCTGGTCGATTCTGTGACCACCCCGCTCCCGATCCAGGGATGGAGCTGGGCAGGGATATGGAGAAGGAGGGGGGTCTTTTGGTATTTTTCTGATCTGTTGACTCCTCTGGTCCCAAGCCCTGAGAGCCTGGGAAGTTGACCCCAGTCTGGGCCTCAGGGAGTAGAAGATGGGGTCTGCTGGTCTCCCCCACCTCCACCTGGGGCTTGGAGTTGGGGTAGGTGTGTCAAGTTCATGGATCGAGGGTCCTTAGGAGAGGCTGCTGGGTCTGCAG
Seq C2 exon
GTCCGGGTGCCCTTGGAGGAGCCACCTCTGAGTCCAGACATGGAGGAGGATGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGCCCCCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975:ENSBTAT00000019936:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCCAACGGAGTGATCCC
R:
ACTCAAAGTCCCGCTCGCT
Band lengths:
214-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]