BtaINT0137041 @ bosTau6
Intron Retention
Gene
ENSBTAG00000043991 | SLIT1
Description
slit homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr26:18146672-18150214:-
Coord C1 exon
chr26:18150117-18150214
Coord A exon
chr26:18146812-18150116
Coord C2 exon
chr26:18146672-18146811
Length
3305 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CCTCTCCCTGCTCCCCACAGGTG
3' ss Score
12.77
Exon sequences
Seq C1 exon
GGCCGAGACTGTGAGGTGTCCCTGGACAGCTGTTCTAGCAGCCCCTGTGGAAATGGTGGGACCTGCCGCTCACAGGAGGGCGAGGATGCTGGCTTCAC
Seq A exon
GTGAGTTACTTGTCCGGGGCTAGACCCTGGTGGGCAGGGTGTTGATGGGTCCGACCTCGGAGCCTTCTTCCTCTGAATGGGATGGCCCAGGGCCCTTGCAGTCTGGGAGATGGGGGGACAGGCTCAGGGGGAGCAGTCATTCACTCCAGATCACAGCCAGAGGCCTCTCCACACACCATCCCCTCGCCCCCACAGGCCAAGCCCCCGACGCTCACAGACAGTGGAAGCACAGAGACTCTGGGGGATGACCAGGTCACCCAGCAGGCTGGGTCGGGGTTGGGCTTAGAGCTCCTGCTCCAGGCTTCTCCCTGCTCTTGCCAGGTGCCAGGCAAGTCCTCCAATGGCACTGGGAACTGTTGCCTAGGGCATATGCACTGGCAGTGCCAAGAGGCAGTTGGGGACGTTTTAAACTCCTATCGTTTCTATTAACCTCCAGCTGAAGCCAAACACCTGCTTGTTGGGCCAACGGTGTCTGAAGGGAGGGCCCTGAGCCAGCTCCTCAGGACCATACCTCCACCTGAGCCCCCCGGAAGGGCTGGGGAAGCCTGCCCACAGGTGGGAGCAAGTCCTGGTCCCGCCCTCCGGGGTCTCCCCCACCAGCTCGTGGGTCACTCTGCGCGCACCATGGGCACAGGTTCCCCACTGCTCAGTGAAGGGCTGGACCTCACCCAGATCCTCCACAGCTCATCCTGCAAGTCCTCCCAGTGCTGACATCGCCACGCGAGCCCCCCACTCACCCTGCTCCTCCAGAGTCTCTCGAGCCCCCCATCTTCCCAGAGTTCTCCTGTACCCAGAGTTTTTCTAAGAAGCACACAGAATTTAGTTGCTGAAAGTAATTTGCCAGCTGAGCAAACTGACTCTTCAGAAAATGATGTCAAGTCCACTGGCAGGAATGGTCAGCCTGTCTCTGCAAACCCAAATTACCAGATGTAAAAAAGAAAACGCTAAATGGCCTCGTGGCAGGTGTCGCCTTGGAAACAGCATCCTTACAATAGGCTCTGACCTCCTCTGGGCTTGGCAGAAGCTCCATCAAAGCCCCCACCTCATTGGCTAGGCTACTGGGGGCATGTCTATGGAGGAGGGGTGCAGCTGTGAGGGTAGCCCCTCACACTTGGCATTCCTACAGACAGTGGGGAGCTGTGGGAAGGGTTCTTTTGGTAGAAAGGGGGTGCCTCCCTGAGTTACCTCCCAACCCTGAGACTTACAAGGGTCTCCTCTGTTATCCATCCCCAGCCCTACTGGAGGGGACTTAGCTGAGATCCCCTTAACCCGCTTCAGACCTCTCTGGTGTCCCGTGCAATCTTGCAGGGGGAATGAAATTCCAGGACACACCCTGAAACAGGCTTCACACCTTTTTGTTCACATACCTGCTCCCCCAAACAGATTTTTTTTAAATTACAAACTGCTTCACGCATTCTTAAGTGACAGCTAAAATTTTTCATGGTAAATTTAATTTTTCATTGCAAAGAAGGTCATTTCCAGGATACTGCACATATTATTAACACTTAAAAATAAAGCTATCATCCTTTAAATCACTCTTTTCTCATTCTTCAGTGAAAAATCACTTTATTTTTTTTTCTTTTGTATTCTGTGACTGCCTATCTCTTTTCTTTTTTTTTTCTTTTAAATTTTATTTTATTTTTAAACTTTACATAATTGTATTAGTTTTGCCAAATATCAAAATGTATCTGCCACAGGCATACATGTGACTTTAAAATCACATGAAGGAGCTCCTCTTGAGCAAGCTGCAACGTCTCATGTCATTTGTGTTTCTTCTCAAACTAGTATTTCCATTTTATTCCCCTCACCGCCACCCTCCCTGACTTTTTCTTCTACTGTAATATGTTTTCATGTTAGAGAGGCTTTTCTTCAGCACCCTGTCATACCTTCCTGCCCCAACATGGGTATATAAGTTTAAATGGAAAATTTTTTCACTTCTTTCTTGTCCCCATAAACCTCTGATGAAAGTTTCTTTTGCATTATCATTACAATGACCAATAATATACAGTTGATTAGAACAACATAACTGTTTTCCAAAATTTGACTGATAATTATTACACATAAAAGTAACATTTTATTAGACTATATCTCTTAATGAGATAGATGGAGCTTTGTGTATGGATGGGCTTCCTTTTCTCCTCCTAATTGGTTCCTATGTCCAGACATGAATATTATGGAATATCAGAGGGCTTAGCAGCCAATCTACTCCTTTTTAAAATACATATATAGCACCCCCCGCTCCCTCTCTCTCTCTATATATATATGGCTATAAATGCTGAGAATGTTCGTTCACATAAATAAACCAGTGGGATTAGGAGTTTTATTATAGCCATGTCTCTCAGTTACTTGAAACCCTTCCAAGTTAATACATCAAAAACCCAGAGTGATCGGTCATCAAAAATTATTTTTAATGCTCTATCTGCTGATAGTTCCATGAGGTCTTCCTTCAATTACTTTTTAATGCACAGAACTGGAAACCTCTTGACTTGCAAAAGCGTTTGTTCCTTCACTTTGGAAACATCAGTATCCCTAACTGTCCCTTTATTTGGCACCAGAGGATCTTAGGCCCCAGGCATGGCCCACCTTGACTCAGGCCGGGATAGGTACCTGTGCACCTTTCAGGAGCTCTGGGGCAGGTCAGTTAAGGGAGGAGTTCATGCAGAACTTGAAGCTGTGGAAATTAATTGCTCAGCCCTCTGTGACCCGCAAATCCTTTGGAATATCACAGTTGCCCCAGGGGGGGAGTGTACCCCAGTTTGAAGATGACTGATATCCAGGACTCCTGCTTACCCCCCAGCCCTCTTCTTACCCCATCCCTGAAATATGTGCTCCTCAAGTCCTGAACTATATAGAGGAAACTGGGGGTGGACTGTAAGGCTCTCTCTCCCCAAGGCTTTTACCCCCACTGCCTTCCCTCTCCTTCCTGTTCTCCCCTGTCAGAGTCCTTAGCTAACTCACCACCTCCTCCAGGAAGCCTGCCCTGACCACTCCCCCCAGGGAGGAGCTAGGTGACCTCTGCCCCTTTGTCCACCTTCTCCAGCATCAGTTTTGCACCATCCTGGTCCTCAGTCTCTCCTTTGGTCGCCAGTCTCCCTGTCATCACCCCCACTAGACTGAGTGATCTCATGAGCACAGGGCTGGTCTTGGTCACCGCTGACCCTCAGCACCTAACAAGGGCCTGATCCAGAGTAGGGACCGAAACTCTGGGTTGATACTCTTGACTACTGGCCACAGGCTTACACCAGTGCCTCAGGAAGGCTGTCACCCTGGCTGTGGGCCCACCCACCTCTCCCTGCTCCCCACAG
Seq C2 exon
GTGCTCCTGCCCCACCGGCTTTGAAGGGCCGACCTGCGGGGTAGACACGGACGACTGTGTGGAGCACTCCTGTGCCAATGGGGGCACCTGTGTGGACGGCGTGGGCAGCTACACCTGCCAGTGCCCGCTGCAGTACTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000043991:ENSBTAT00000061296:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.2=6.1),PF0000822=EGF=PU(64.7=66.7)
A:
NA
C2:
PF0000822=EGF=PD(32.4=22.9),PF0000822=EGF=PU(90.3=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]