BtaINT0141591 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36965309-36970222:+
Coord C1 exon
chr29:36965309-36965495
Coord A exon
chr29:36965496-36969947
Coord C2 exon
chr29:36969948-36970222
Length
4452 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GCCCTCGCTGCCACCTGCAGGTA
3' ss Score
9.43
Exon sequences
Seq C1 exon
ACTGTGGGCGGCGGTCGTTCACCAGGCAGTCCCGGGTCGTCGGAGGTGAGAATTCAGACCAAGGCGAGTGGCCCTGGCAGGTGAGCCTCCATGCCCAGGGCCACGGCCACTTGTGCGGGGCCTCTCTCATCTCCCCCAGCTGGATGATATCTGCCGCACATTGCTTCGTCGATGACAGAGGATTCAG
Seq A exon
GTGGGTCACAGGCAGGAGCTGGAAGGCCTCTCCAGGGCGCTGAGTGGGGTCCCTGTGTGTTTCCTGAGGTGGAAAGGCCCTGTGTCTATGAGGCCTGCCTAGGTGAGGCAGGAGCAGGACTGGAGGGGTGGGGCTTGGTAACGGAAGCACTGAGTGTTTCGTGGATGCCTGCTTGTCCGAGGGATCTCAGTGCCTCTTCTAAAAGCCAGGCGGGCAGGTCTCATATGTGCCCATCTTACAGAAGCAGAGGATCAGAGAGGTAAGGATCTTTGTCTGAGGTTGTACAGCTCTTAAGCGGCAGAACCAGACTGTAGCCCTGGTGTGTGGATTCCTGAGCGTGAGCGGTCAGTGTCTGCAGGGCGGGACCCCGCCTTGGGGCCCTCAGATCCACGGCCCAGCTCTAGGCTGCCAGGCTGCCATGGGCAAGTTTTCTGAGCCTGGGGCTCCTGGGGGCTCATGGTGATGCTGCAGTTTGTAGGCTGAGAGGTGTGAGAAGGAAACACGAGGGTGACAGTGAAGCGCTGAGCCCATGCTGGTGCCCGCGCAGACCTGCACCCACCCCGGGAAGGGTCACCAAGCACATCACTGGGCCGAGCTGGCCTCTCAGGGCAGCTTAGCGGGAGCAGGGGGCCCAGGGCTGGGGCTCTTTGTGACTTGGGTCCAGCCCGCCCAGGCCCTCTTGCCATCGGCTGCGGGAGTGAGACTGAGGGCTTAGAGGGGCCCCCCTTCCTCAGGCCCTTCCTGCCAGCCACCAGCCTTCCAGCCCTGGGCAGCTGCGGGTGGAGGGGACCCAGGCTGCCATGGTCACCCTTTTGCAAAGAGACAGAAGGAGCACCGTGGACTTTTGGGACAGACGGGGCCCGCAGCAGGAAGTAGGCCTGTGTCCAGATGGTGGGGCCTGACTGGTGAATGTGCTGGAGAGGTCACTGGAGGCCTGTGGGGGCTTGGGATCAGTGGTGGTCGCTGGGCCTGGCTGGGTGGGTGAAACGTGGCCCGTCTTCTCACTAGCACACTCCACACCACTCTGGGCAGAAGTGAGCCGCTTTCTTCCCGGGGAGGTGGGAGCCTACTGAAGAAAGTTTAGAATGAACTTATCATTTTGGAATGTGGACAACTTGCAAAGACAGGACAGAATTCACTATACCACCCCCCACACATACTTTCCCTTGATGTTATCGTGCTGCGTTTGTCAGCTCCGAGAAACTCACAGTTCTGTACTAGAAACTCGCCTCGGGGCTGCCCCAGGGCTCCGCTCCCGCCCCCTGACCCCAGGTGCCCTCCGAGCGTTTCATACCATACGCATTTCATACCAGTGTCCTTTCTGCAGCGAGAGTCCTTCCAGGTGCCCCCTCAGTGTCTGCTGCGTGTCTCCCCAGTCTCCTCTGTCCCGGACGGTTTCTCAGTCGTCTTTGTGTGTTTTTTGTGACCTGGACTATCTGAAGGCCAGTGGCTGCTGACGTTGTTCTCGTGGTTAGCCTGGGGTCACGAGTGTTGGGAAGACAGTCATGTCTTATCAGCAGGTAAATGATGTCACCGTGGCTGATCACTGGTGATGCTCATCTTGGTCATCTGGTTCAGAGGCTGATGCCAGTTTCCCCCCCTCCCTCCCTGGATCTCCTTCTGGTCTCTATTCTTCGGAAGTGAGTCAGTCTGGCGTCGTTCTGTAAGAAGGATTTGTCCCTTCTCTCCCGTGTGTTTATTTAATCATCCATTTCTGTGTGCAGGGACTTGTGTGTGTATTTTGGGTTGTAATCTGGTATCGTGTTGAGTGGTGTCACTTGATTGTTTTGGAGCTGGCCACTGGGAACTCTCCAGGCTGGCTCCCGGCTCCCTTTGACACGTCCCCCCTTCTTCTGTTCTTCTGAGCCGCCTCCCTGCTGACACTACTTGGTGCTCCAGGCTCATCTTGTATTTTCCTGGCCCAGGCCCAGAGCTAGGTAGTCCCCTGAGAAGGAACCAAGATCTGGGCACTGCGCACTCCTCGGTTCCCGCAGTCCCCTTGCAGCCCCATCAGCCAGTGAGCTGGGAAGTGCTTCCTGAAGTACCCGCCCCTGGGCCCTCGTTCCCCTGCTTCATCTTTTCATTTCTCGTTTCCTTTTCCTTCCTCTTCTCCTGCTCAGCAGTCTTCCTTCTGTCAGTGAATGCACTCAACACCCATTGTTATCACTGGCCTGGGAAGACTGAATTAGACTTGGTCCCTGCTCTTCCAGATGTCCCGGGGTAGGCGGACAGGGTACACGCATACACACATGTGCACACATGCGTGCACAGAGCTGGGGAGAGGCTGTCGAGGGCCCAGAGTGTGGCGTTCGAGCTCTCCTGAAGGCTGGGGAGAGTGACTGCTAGGGAGTGCCTGTGTGGGCAGGGTGTCCGGTTTGGTGTTGAAACGTGAGGGTGTTTGTCACTGCACCAGGTGACTCAGACCTTCCAGGTAAAGGCAGGGCTGTGAGCAGGGACAGGCAGGGGTGAAGTACGCTAGGACCTGAAGTGCAGGTACTTTGCACACATTTCTAAGTCAGCAGGTGACCCCAGGCTGTTCCTGAGAGGTAGCATCATGTGTCAAGAGCACGGGCTGCTGGGTAGAGTCGGTGGCCCATGACCACCTTGGTGGTGTGTCTAGGGATAAGATAACTTAGCATGTCAGCCTCTGGAAGAGTGCTTGTTCTGGCTGACTGGTCGACCTCTGCTTAGGTCTCAATGGAATGGCCAGGGTTTACTGCAGGTGTTTCGTGCTGCTGTACTGTCTAACCTGTCACCGAGTTACCTCTTGATGCGTGACCTTCTTGATTCCTTCCCTGTCTGCCATCTAGCCTGATGTGCGTGTGACGGTGCAGCATGCAGAGTCACTAGCTGACTCGGCACGACCAGCGTTCTTCATGACCTTGTGGGGGCTTTCACACTTTGTCTCTTCTTCCCCCTGCTGCTTTTTCTCTTCTTTGCCTTCTGGAAGTTCCAGGCCCTCTCTGCCGACTGACACCAAAGTCTTCTCAGATTCCTTCTTCTCTCAGACACTGTACTCATCTGTGGGCTCCAGCACATGGGTCACATCTCAGCTGTGCTTCCTGAGATGTTCACATACACCCAAGGCTGAGCCTTTTCCCAGTTAGTGCAGCCATCATGGCACTTCTGTCCTAAGTACAGCCGCTGGTGTCCCCCAGGAACAAGGAAATCCTCCCACGTCACCACCATAGTTATAACACCCAGAAACTAGCGCCCTGACATAGCACTGTTAGCTGGCATATGGCCTGATTTCAGATTCCTTCAATTCTCCCGGTATTTATAGGTTTTTAAAAAAGTCTAGGATCCAGTCAAGGGATATGCTTTGTTTTAGTCATTATTTTTTTTTTAATTTATTTTTAATTGGAGAATAGTTGCTTTACAATGCTAATCTCTTTTAAGTCTAGATAGTCTCTCCCAGCCTTTTAATTTTTGTTTTTTTATGGCATTGCATTTTTGAAAGTCCCAGCTGCTGTTCTGCAGAACGTCTCTCCATGTGGATTTTCCTGGTTGTTGCTTCATGAGGAGAGTTAGGTTCAATATTTTTTTGGTCAGGAAATGCTGCACAGGTGATGTGTCCTCAAGAAGTACACAAGTCCCCATCAATGGAGGACAGTTTGGAGAGAAGTCTGGTTACTTGGTTAGGGTGATGTCCACCAGGTTTCTCCATTATAAACGTATTTCCCTTGTTGGTGTTTTTTATTGTTTCATCACTAAGACACGTCTGACTCTTTGAGGCCTTATGGAGTGTAGCCGCCAGGCCCCTCTGTTCATGGGGATTCTCCAGCATACTGGAGTGGGTTGCTATGCCCTCTTCCAGGGGATCTTCCCAGTGCAAGTTCTCCTCTTCTTCCACCTCTGCCTGCCAGCATCGTCTCCCAGCAACAGCAGGGTCTTGTCCTTATGGGTTCAGTTCTCCTATGTGCAATGGTGAGAACTGCTGCATCCTTCTGCTACCATCCACAAACCTGGGAGACAAAGTTCCATCTACTTTTCAGCTCATCTGGTACTTAAAATATGTACCTCTGCTCTAGAGAAGTACTTGGATTGATCCAACCACCTCATCCTCTGTTGTCCCCTTTTCCTCCTGCCCGGAATCTTTCCCAGCATCAGGGTCTTTTCCAATGAGTCGGTTGTTTGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCGTTCTAGTGAATATTCAGGGTTGATTTCCTATGGGATTGATTAGTTTGATCTCCTTGCTGTCCAAGGGACTCTCAAGAATCTCTCCTGGCAGGAAGGGTAGACTAATAAGAAGGGAGATCTTTTTAGTAGTGAGGTAAGAGTGTATTGAGAGAGGGCAGCAGGGAGGGAGACCTCTGAGCATGGTCTCCGAGTGGGCACAGGCTTGGGGCAGGGCATCTGGCTGGAGTCCTGGCTCAGGCCTCCCTCTCCGGCCCTCGCTGCCACCTGCAG
Seq C2 exon
GTACTCGGAACACAGTGTGTGGACAGCCTTCCTGGGCCTGCATGACCAGAGCAAGCGCAACGCCCCGGGGGTTCAGGAGCGCGGGCTGCAGCGCATCATCAAGCACCCGTTCTTCAACGACTTCACCTTCGACTACGACATCGCGCTGCTGCAGCTGGACCGGCCGGTGGAGTACAGCGCCACCATCCGGCCCATCTGCCTGCCCGCGGCCGACTACACCTTCCCCACCGGCAAGGCCATCTGGGTCACCGGCTGGGGCCACACGCAGGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712:ENSBTAT00000026272:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.3=79.4)
A:
NA
C2:
PF0008921=Trypsin=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]