BtaINT0141694 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044129 | ST6GALNAC6
Description
Bos taurus ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 (ST6GALNAC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001001151]
Coordinates
chr11:98572244-98575284:-
Coord C1 exon
chr11:98575105-98575284
Coord A exon
chr11:98572651-98575104
Coord C2 exon
chr11:98572244-98572650
Length
2454 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GGCTTTCCTTAACCCTCCAGACG
3' ss Score
6.8
Exon sequences
Seq C1 exon
GAGCAGCGGTCAGCAGTGTTCGTGATCCTCTTTGCCCTCATCACCATCCTCATCCTCTACAGCTCCAGCAGTGCCAATGAGGTCTTTCATTATGGCTCCCTGCGGGGCCGGACACGCCGGCCTGTCAACCTCAGGAAGTGGAGCATCACTGACGGATACATCCCCATTCTTGGCAACAAG
Seq A exon
GTAGGGCAGCCGCTCTGGGGAACTCCCTGGGAGCTGCCTGGAGACTGCCCTTCCCCATTGCCCACCATCACTGCCCCTACCTTCTTCTCCTCCTCCTCCTCTTCTCTCTACTTCCTCCATCCGTCCTAAAGAAAAGGGTGGACCCCAGGAGTCCGGTGCCTTCAGCCCCTTGTTTGCGATGTGACCTCAGACAAGCAGCCTGTCCTCTGGACCTCAGTTTTCTCCAAGGTTCCACCCTCAGTGCTAATAGCCTATAATCTCCTGAATCAGAATCCCTTTAGAAAGGTCTGTCTGGTTTTCAGATCTCAGTCTCTGCAGGGGAGTCTACATAGGATTTGGGAGCAGGACTCTAGGGTACTTGACAACACAAAAGCAATAATAAGAATGGCTGCAGTGGTCAGTTGCCCGCTGCGTGCTGGGCACTGTGATCAGCAGTAATCCTCATACCAGTGCTGTGAGTTTAGCATTATCTCCCTTGATGAGATGGGGAAATTGAGGCTCAGAGAGGCAAAATTACTTCCCCAAGACCACACAGCAAGGGAGAGGAGGAGCCCAGGTATTGCCCCAACATCTGCTGAGATACAGCTGTGTGGAGAGGCCCAGAGCCTTTCCAGGGACTTCTGTTTGTTTTGGATAGCCATGAAACTCAGGTTGTATTTCCGGAGCTCACCTTGTAGTCCTCTGAGCCCCAGTGTTTTCCTTGGGGTCAGGGAGAAAATTATTGGCCTCCAGCATGGATGCCACCTTCCAGAAGGAGGTCCCTCAGCCCCTGCCTACCTCACTCTCTTCCCTCACTAACCCTCCTAAATCTCTAGAGGTCTTTGCATATAGAGCCTGGGACCATGAGCTCATCCTCACTGGAAAAAGGCCCATTAGCATGTGTTTAGAGACAGAGGCTTCCCTGGTAGCTCAGCTGGTAAGAATCCACCTGCAATGCAGGAGACCCCAGTTCCATTCTTGGATCAGGAAGATCCCCTGGAGAAGGGATAGGTTACCCACTCCAGTATTCTTGGGCTTCCCTGGTGGCTCAGTCAGTAAAGAATGTGCCTGCAATGTGGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATTCCCTGGAGGAGAGCATGGTAACTCACTCCAGTATTCTTGCCTGGAGAATCCCCACGGACAGAGGAGCCTGGTGGGCTACAGTTCATGGGGTTGAAAAGAGTCAGACACGACTGAGTGACTAAGCACAAGAGACAGATTAAGGGCTTCCCCATTGGCTCAGTGGAAAACAATCTGTCTGCAATGCAGGAGACCTGGGTTCAATCCTTGGGTTGGGAAGATTCCCCTGGGGGAGGGTATAGCAACCTGCTCTAGTATTCTTGCCTGGAGAATTCCGTGAACAGAGGAGCCTAGTGGGCTGCAGTCCACAGGGTAGCAAAGAGTTAGACATGACTGAGCGACTGAGCACTCACACACGACATGAGAGACAGATTAACACCTAACTGAGACTTTCTCTACCCTAAGGATCCTTGAAAGAGAAATGGTAGAATCCCTGGGAGAAAGTGGAACTGCTTGAGGGTGGGTGATGTGGAAGGGAATGAGACAGCTTGGCCAGCAGCTGTTTCCAGCCTGATAGGGGAGGCCAGGATGTTAGAGCTCAGGAAAGCTGGCAAAGCCATCAGTTGAGGTATTAAACATGAGACATGTTGCTGGATCTTGGAGTAAGGCCTCAAGGAAGGCTGCCTGGAGGAGGAAGGCACCTGAACTTAGCCTTGAAGGGTGCACAGAAAATCCATGGGCAGAAAATAGGCTTCAGATAGCTTGTGGTTCCAATCTGTTTATTTCACCAATGGGAAAACAGAGGCTCAAAGCAGCTTCCACACCATTTCCTACTGACAAGTTGATGGCCTGTTTGTGGGTGATGTGGAAATGTCATGGACACATTGGGGAGGATGTCTTCTTTGAAGAGCTGGCCTGAGGGTGAAGCTGGGGCTCTGTGGCCATGTAGACCTAGGTTCACATCCTGGCCCTGCACTCCTCTGCTCTGCGACCTTGGGGACATCCCAGCATGGCTGTCCTGCATGGTTTCTTTTCATCCTTTAGGTGTTAGCTGAGAGAGGCCCCCTCAGATGACTTTTCTAGCACAGCCCTCACTCTTGCCAGCCTTGATCCTCTGCCTCTATTTTATTTCCTTCCCAGCACGTATAACTTACCACCTGGCATTATTTTACCATTTACTTGTTCACCATCTGTCTCCCCAACTGTGAATTTCTTAAAGGCAGGAGTGGGGTCTCTTGTTTATTGCTCTGTCTCTTGTACCGGCCATTAGCAAGCTTGCTATAAATATCTGTTGAATGTTGAATGAATACGGCTCAATTTCCCTGTCTTTAAAATGGGCATCATAATTCCCGCCTCCTGGAGGGATGGAGCACAGCGTCTGGCACCAAGTGGTCATAACAGTGTTGGCTTTCCTTAACCCTCCAG
Seq C2 exon
ACGCTGCCCTCCAGGTGCGGCCAGTGTGTGATTGTCACCAGCTCCAGCCACCTGCTGGGCACCAAGCTGGGTCCTGAGATCGAACGGGCCGAGTGCACAATCCGCATGAACGACGCACCCACTACGGGCTACTCGGCCGATGTGGGCAACAAGACCACCTTCCGCGTGGTGGCCCATTCCAGCGTATTCCATGTGCTGCGGAGGCCTCAGGAGTTTGTCAACCGGACCCCTGAAACTGTGTTCATCTTCTGGGGCCCCCCAAACAAGATGCAGAAGCCCCAGGGAAGCCTGGTGCGCGTCATCCAGCGGGCAGGCCTGGTGTTCCCCAACATGGAGGCCTATGCCATCTCCCTCAGCCGCATGCGCCAGTTTGACGACCTCTTCCGGAGTGAGACAGGCAAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044129:ENSBTAT00000061027:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(14.1=63.3)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(50.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development