BtaINT0141766 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014782 | STAB1
Description
Bos taurus stabilin 1 (STAB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001205570]
Coordinates
chr22:48897710-48898459:-
Coord C1 exon
chr22:48898348-48898459
Coord A exon
chr22:48897897-48898347
Coord C2 exon
chr22:48897710-48897896
Length
451 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GCTCCGTCTGCTCCTTGCAGACT
3' ss Score
8.84
Exon sequences
Seq C1 exon
TGCAGCGATGGGGTCCAGGGCAGCGGGGCCTGCCTCTGCTTCCCAGACTACAAGGGCATCGCCTGCCACATCTGCTCCAACCCGAACAAGCATGGAGACCAGTGCCAGGAAG
Seq A exon
GTGGGTGGTCCTGGCCAAGACCCCCTGCCAGGGAGATAAAGGGTCTGCTTGCAAGGTGGGCTGGGGACTCCCAAGACATGAAATAGAACCTCAGGAAAAAGGGTTCAGGCCACAGATCATGGAGAAGATTTTGGAAACACAAGCAGGTGTCTGATCCATGCTGGAAAGACAACCACAGTTCAATCTAAAGCATGAAGGGTTTAGGTCAGACACACAGAAGAACTTTGTGATGGTGTTGGGAGCAGGGCAGCTAGAATAGGGTGACTGTAAGCAACGAATTGCTCTGTTCTTGTTTCTTCCCCTCTCCTTTCGAGTCTGGGATGACTTGACTTTGTGACCCTGCAGTCAGACCTTTTCTGGCTGCTCCAGTCCCAGCATTGCCCAGCTGCGTCCTGGCTCCCAGCCAGCCATGCCTCTGCCTCAGTTTCCCTGCTCCGTCTGCTCCTTGCAG
Seq C2 exon
ACTGCGGTTGTGTCCACGGTCTATGTGACAACCGTCCGGGCAGTGGGGGGGTGTGCCAGCATGGCACATGTGCCCCAGGCTTCAGCGGCCGCTTCTGCAACGAGTCCACGGTGAGCTGTGGGTCCACGGAGCAAGCCCAGCAGTGCCACCCACATGCCCGCTGCGTTAACCAGGGGGGTGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014782:ENSBTAT00000019663:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129472=EGF_3=PU(57.1=31.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCGATGGGGTCCAG
R:
CCTGGTTAACGCAGCGGG
Band lengths:
286-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]