BtaINT0141847 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67711008-67714022:+
Coord C1 exon
chr5:67711008-67711139
Coord A exon
chr5:67711140-67713893
Coord C2 exon
chr5:67713894-67714022
Length
2754 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGA
5' ss Score
7.75
3' ss Seq
GTTAACCTTCCTGTTCACAGCTC
3' ss Score
8.01
Exon sequences
Seq C1 exon
GAGGAAGACATACTCAGGTATCACGTGGTCTTAGAGGAGAAGCTGCTGAAGAATGACCTGCACAATGGCATGCACCGGGAGACCATGCTGGGCTTCTCCTACCTCCTCGGCTTCTTCCTCCATGATGACCAG
Seq A exon
GTGCGATCCTTCCTCTGAAAACACAATGGGCGTCCTAGCTCTGCCATCCGCCATCACTTTCGCATTGGATAATCTTCATGACCACTTCCTCAGCCTTATCCACAGCAGACAGCTGTCTGTGTTCCACCACAAAGTAATGACTGGGCCAGACTGGGAAGCTCCTCCTTGTCCACCCCATCACCAGCCCTCAGACCATCAGTGTGGTCTGACTGGTCTGGGGATTGAATCCCAACAGTCACAGGGCCCTTCAGTTCTGCTTCCTAATAACAGACAGTCCCCAAGCCACCTCCAAGATGGCAGGGAACCTGGCAGCCAAACGTAACCCCCCAAAGTGGCATGGCCCCAGGGTGTAAGGAGCCACCTGACATGTGAAGGAAGGATCCAGCAGCCACATGAATGAACAATATTACCATTGCTTGTTCATACAGACTGCAGACCTAGGGCCAACTGCCCCCACCCCAGTATCCCAGTATTAATCTCACACAACCTCTAAGCACTTAAAGTGTTTAGAATTTGTAAAAAGAATTGAGACTAAATACATATTTTAAACATTTCAGTATGCAATTCTATGTACCTATGTCAAATAACCAGTGAAACAATCAATTGGAAAATTCAATAAGAAATTCACTATGTGACTCTGGTATAAATTCTCACAAGAAAAGGTAATAAAAACTAATGATTATTTAGGAGAAACTAAGCATTATATTAAAATGATGAAAATTTAATCCCAAATTTTTAAGCGGTAATATTGTTCCCTGTAAAAAAGTGAATTTTTTTTAAAAAGCACAATTTTAGAATCAATATTCTCAGTGTTATCATCACTGAAGCCCAAGTGAATTTTGTGTACAGTTGCTTTTTTTCTTAACATGCTCAGGTTTTGGGTTGTTTTTTTTTTAAGTCTTTCTGGTTTTTCATTACTTAGAGAATAATCGAACGCCAAATATTTCCCTCTGACTCCTATAAATAATCTTACCTATTGTGTAATAATTTTGAGGAGATCCTTTTAAATACATTTCCTTTTTTTTTTTCCAGGTAAGGCAATTTTTGTTGATAAGGACCTTATATGTTTGTTTTTATCTTTGTTATCGTTTATTTCTTCATGTAGAAATGAATATTCTGGTTAGTTGAATCAGTTTTGATTCTGTCATGTTTATTTTCCATGTGTTTGAAAAGTCTTTGATCTAGAGCTTTTTTTTTTGTCTTTTACAATAGAGACTTTATCTTAAATAGTTCTATCTTACAATAGAGGTTTTGCTTTTATTGATAACTCATTCACTCTCAGGACAACAGAGATGTGGGAAAATGCTGTCTAAATGAAGAGATTTGTGTTCAGATCAAAATTCTAATGTAGCTTGTAATTCTTCAAGTATATCTCATAATAAAAATGGTTCAGATTTTTTTATGCCAAATCAACAGTATTACAACATCAGAAGTTCTGACATTTTGATATTTTAAATCAGCTCAGCCTCTTGGAATTCTGCAGATTTGTTTTGTGATCACCCTTTGACTCCACAAGTGAGGCCCCTGCTGCTTCTCCAAACCTCCACAGGCCCTGGACCACTTCTGTGCACCTCAGTCATGATTCTGCCCAACATCCCACGGAAATTCACTTGAGTCCAAGTAAATCATCAGGGACTTTAACAGTCGGTGGAAGTTCAAGTTTAAACACTTAATAGCGTCACTTCACTCTTGATGCATTGGGGAGTTTGGGAGATGGTAATCATTTTTAAATGCTCATTAGATATGAAGTTGACATCTGTTTAGTACAACAAAGAATTCCCTCTTCTCCCAACCTCAGCCCTGCTACAGCTATACACACACACAAGTATGACCCCTCAGGTTTTCAAACAGCCATTTGTTTTCAGTTATATTAATTATACTCAGGAATGAATTAATGGCTTTACTTATTTTGCACTAAACAATCATTAAGATATCCTCCGATTTAAAAAAATCAAAACCAAACAAGTTATAACTCAAAGTTGAATTTAAGTTAGAAATTTAGTTCCCATGTCTTACACACTTACTGACACACTAGGCAAAGACGGTACAAACAAAGACAGTACAAACGTCCTGCGGACACCAGAGAAGCCCCAAGGAAAACATGATACGGTTAATGCAGACCTCTGAGCAGTCGCCACACCCTAGAAAGTGGTCTATCTGGTAGAACACATTTTTGCAAACTCTAAAACACTCAAATACTATTTTTACTCTCGTGTAACGGTAATTTAGTCTTACTGAGGGGTGCTTGCAAGGTAACCAGGAAGCAGAGATATGCTAAAAGGGTGCTAAGTTTCATTCTCTATGTCTTGGCTGTGGAAGGCATCTACACCTCTGAGGCCACCAATAACTAGCACAGCTGAGCACATCCTTGGAGACATATTATCAATGGCACTAACATAGTGATCGTGATTCAGAATTTTTTGAACAGTGAAAACTGATCATTTGGATGATGGAGAGAAAACTTAGAGATTATCAGGAACAACCTCTTCTTTTTACAAAGGAGGAAATTGAGGTTCAAAGAGGAAAAGCAACTGGCCCAAGGTCACACAGATAGAAGGCACCAGGTGCAGAACTGTCACTCAGACTCCCCTCTCCTAGGGCAGAGCTGTCTCCTGTACAATGTGCTGTACCTGCCAGGTGAATATTGCAGAATCTCCTAGGCTAGCGTCATGTTGACATCCTCCAATCCCTATCGTCCTTATTTCCCTTAAAACCACTGTAGTAAAAATTGATAGTTAACCTTCCTGTTCACAG
Seq C2 exon
CTCTATGTAAATGAGGCTCCGATAAACTACACCAATGTAGCCACTGACAAGGGAGTGATCCATGGCTTGGGGAAAGTGCTGGAAATTCAGAAGAATAGATGTGACATTAACGACACTACTATCGTACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(35.8=100)
A:
NA
C2:
PF0246917=Fasciclin=PD(23.3=65.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]