BtaINT0141855 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006010 | STAB2
Description
Bos taurus stabilin 2 (STAB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206679]
Coordinates
chr5:67726818-67730465:+
Coord C1 exon
chr5:67726818-67726894
Coord A exon
chr5:67726895-67730339
Coord C2 exon
chr5:67730340-67730465
Length
3445 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTCATCTTTCTCTTCTATAGCAA
3' ss Score
9.19
Exon sequences
Seq C1 exon
CTGTCTTCTCAATCTGGATGGCACAGCCTTGTGCAAATGTGCAGCAGGGTTCCAGGGGAATGGGACCATCTGCACAG
Seq A exon
GTAAGTAAGGAATTTGCTAGGTGGAGGGTAACCCAAGCTATTGAGAGATCTGTGTTTCTGCAGACTAACTGGGCAGCTGCAGGACTTCCCTGGTGGTCCTGTGGTTAAGACTTCATGCTGCCAATGCAAGGGGTGTGGATTCGATCCCTAGTCAGGGAACTAAGATCCCACTTGCCATGTGATGAGGCCAAAAATAAATAAATGGACAGCTGCTAATGAGCAGTGATGGGGAACCGGATGTGGTAGGGTGGCTGACCTCATTCAGGGGCAGGACACCTACTATTCACGGATTAGATGTGTTGGTTTTGGAACGTCCGGGGCCACTGCCCTGGTTCTCTTCTCTAAGTCTTGGCCACAATTGGAATCACCTGGAGAGCTTTAAAAATCATGGATTTGGCTGACCAAGGGTGTGGCATGGGCATGGGGACTCTGAAATGGGACACGAAGAGGCTTGAGCCCTGGTTCTTTTTCCCATTCCCCACATGGCCTTGGGTGGTCTCTAAACTACCCTTAAAGTAAACATAAAACTATGTCCCTTGCAGAGCAATTTGGGATGAAATGACCTCTCCACGTACAACAACAGAATGAGACAGCTGTCAAAAACAGCCCCGATGTTAGACTCCTTGGGTTCAAATCCATGTTCTTACACTTTGTGTTACCTGGGGACAGTTGCTTGACTGCTCTTTGCATCATTTTGTCATCTGTAAGTTGTAGGTCATAAGAGAATCTTGCTCAGTGGATTGTTGGATGGCAGCATGACTTAATTAATACCTGTGAACATTCCTGGAACAGAGCACTCAATAAATATGAGCTAACGCTCTTATGGTGACCAATACATATTCAGTGCTAGAAAAAAATGGAAACAGCATCATTTTCTCTTGACACTGTGTCCACGAGGGCTTCAGTCCAGACTGTGGTGGAGCTAGACAATGATTGCACCAGTTTGCTTTCTTTTTTTATTAATTAATTAAATTTGGGCTTGCGTTAGCTTTTTCTGGTTGTGGTGAGTGGGAGGCTACTCTCTAGCTGTGGTGCACAGGTTTCTTATTATGGTGGCTTCTCTTGTTGCAGAGCACAGGCTCTAGCACATGCGGGCTTCAGTACTTGTGGCACACGGGCTTAGTTGCCCTGCAGCACATGGAATCTTCCCAGAGCAGGGATTGGACCCATGTCCCTTGCTTTATAAAGCAGGTGGACGCTTAACCACTGGATCACCAGGGAAGTCCTCACCAATTTGCATTCTAGACCATCTGACCCTGGGGATTGTCTCAGGTGTTCCCTGAAGTAGGATGTGTTCAACATACCAGTGAAAACAATGGAAAGACAAGTAACTGTGATTTCTCTTGCCCCCTGTTTTTCGGGGAGATAGCAAAACGGCAGCTGTTATAAACAGTCCTGTCGTCAGACTCCCTGGGTTTAAGTCTATGTTCTTATAGTGTATGTTACCTGGGGACAGCTGCTTGACTTCTCTTTGCATCATTTTGTCATCTGTAAGTTAATATAATGCTCAATATTTCTATAAAACTTTCATATACATTATCCAAACCTGTGCATAAGCTTGTATGGGTGTACCCCAAAATTCATACTAATTAAGTCATTTGTCTAAAGTCACATGTTGAATGAAGGGCAAGCCAGGACTCATACACACACCTTGGGACTCCAGATCTTAGATCTACTTGGAATTGATTTTTGTATACATGCCTGCATACTCAGTCTCTTCAGTCTGTCCGACTCTTTGCAACCCTATGGACTGTAGCCCGCCAGGCTCCTCAGTCCATGGGATTCTCCAGACAAGAATACTGGAGTAGGTTGTCATGCCCTCCTCCAGGAATCGTCTCCACCCGGGGATCGAACCCATGTCTCCTGCTTTACAGGTGGATTCTTTACCACTGAGCCATCAGAGAAGCTCTTTTGTGTATATAGTGAGGTCCAAATTCATTCTTTCACATGTGGATATCTAATTGTCTCAGTATCAATTTTTAAAAAGATCATTCTTCCTGTGATGGAAATAACATATTGGCACCTTTGTGGCAAATCAGTTGACCACAGATGTTTGAGTTTATTTCTGGACTCTTAATTCCATATGGATCCTTCTGCCAGTTCCACTCTGTCTTTATTACTGAAGCTTTGTAGTAAGTTTTGAAATTAGGGAATGTGAGTCCTCCAACTCTGCTCTTTTTTTTAAAGATTGTTTTGACTGTTCTGGGCCCTTTGAATTGATATACAAGTTTTAGAATAATCTTGTCAGTTTTTGCAAAGAAATCAACTGGGATTTTGACAGATTGTGTTTAATCTGTAGATCAGATATAGGGAGTAATGTCACCTTAACAATATTAATTCTCTCCATCAATGAACATGGAACGTCTTTCTATTATTTAGGTTATCTTTTCTTTCTTTCCACAATGTTTGCAGATTGCAGAGTGTTTTATAATTTGTTAATGGAGTCCATCTTTTGATGCTATTGTAAGTGGACTTGTTTTCTTAATTTCATTTTCAGTTTGCTCATTGCTATGGTCTAGAAGTACAATTGATTTTTGACTGTTGATCCTGTGGCCTACAACATTGTTGAATTCAGTGATTCACTCTAATTCTTTTTAGTGGATTCTTCAGGATTTTCCATAGCACATCATGTTATCTGCAAATAGAAATGCCTTTACATATTTTCTAATCTGAATGCCTTTTATTTCTTTCTTGCCTAATTGCCCTGACCAGAACCTTCATTCAACACAGTGTTGAACAGAAGTGGTAAAAGCAGACCTACTTGCCTTATTCCTAATCATGGGAGAAAGCATTTGGTCTGCCATCATTAAGCACGATCTTAGCTGTGGGTTTTTCATAAGTGAAAAATGTCCTCTATCAGGTTAAGGAAGTTGCCTTCTATTCCTAGTCTATTGAGTGTTTTTATCATTAACAATATTGAATTTTGACAAAAGGCTTCACTCCTTATACTAGGATGATTGTGTTTTTGTCTTTCATTCTGTTGCTGTGCTCTATTACATTAATTGACTTGGGGGTTGTTAATCTTGTATTCCTATATTAGTACCTCTTTCTTATAGTATGTAATCACGTTTATATATTTCTAAATTTGACCTGCAAGTATTTTCTTGAGGATATTGAATCTATATTCATGAAGGATATTAGTCTATAGTTGTTTTGTGATAGCTTTTCCTGGTTTTGGTATCAGAGTAATACTGGTCTCATAGAATGAGTTGAGAGTCTTCCCTCCTCTTTCAGTTTTTAGGAGAGCATGTGAAATTTTGGTATTTATTAAATGTTTGGTAGAATTCACCAGTGACATCTAGTGCTTTGCATTCTTTTGAATTATCTATATTTAATCCAATGCCTGCCATTTTGAAGTAACTTCTATTTCTCAATCACTCAAGTAAAAACACATCAATTTTCCCCCTCCTCCTCTACTGCTCTGTGTCATCTTTCTCTTCTATAG
Seq C2 exon
CAATCAATGCCTGTGAGATCAGCAATGGAGGTTGCTCTGCCAAGGCTGTCTGTAAAAGAACCACCCCAGGAAGCCGGGTGTGTGTGTGCAAGGCAGGCTATACTGGCGATGGCATCGTGTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006010:ENSBTAT00000007896:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(66.7=88.9)
A:
NA
C2:
PF129472=EGF_3=WD(100=86.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]