BtaINT0143085 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007330 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:HGNC:11446]
Coordinates
chr3:34718493-34719231:-
Coord C1 exon
chr3:34719182-34719231
Coord A exon
chr3:34718575-34719181
Coord C2 exon
chr3:34718493-34718574
Length
607 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TAATTTATATTCATTTTAAGATA
3' ss Score
6.91
Exon sequences
Seq C1 exon
AGATAAAAGCAACAGTGTTTGATGACTGCAAGAAAGAAGGCGAATGGAAG
Seq A exon
GTAGGATTTACCTAGTCACATAGAATTTGCATAACACTAGAAACCTTTATTGAGGGCTTGTACATATTTTTTACTTATTACGCTTGTATAAAATACAGAGTTAGAACCATAGTGTTTGCCTTCAAATCCCAACTTAACCTCCTATTAGCTGTGGCTTCTTGAGCAAATTACTTGATGGCTCTATGCCTGTTTCTTTATCTGTAAAATAGGGATGGTAGTAACATAGAGTAGTTGTAAATATTAAATGAATTAATTCATGAAAAGTGCTTAGAACAGTGCCTAGAACAATTATTCCACCACAAGCAGCATTTTATGATTTTAAGAAAATTTGATGTTCAAATAAGATACATTTGAAGTGAACAAATTCTGCTTCAAAGTGAAAATATTGCTTACTTATGTATAATATTATATGACCGTATATTGAGGAAATAAATTTCTAAGTCATGAAAGTTAAATGAGTTGAGATAATTTTGCTTGCTCTCCTGATATTTTAATTTTGTTATAAAAAGATTATGGAATTTGAGTATATTTAATGCATTAAATTATGTCTCGTGAATTCTTGGCAGTCAAATGCTTATACTATTGCTTAATTTATATTCATTTTAAG
Seq C2 exon
ATATTGCTTCTAGATGAATTTACCACTAAGCTTTTGGCATCATGTTGCAAAATGACAGATCTTCTAGCAGAGGGTATAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007330:ENSBTAT00000009642:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=PU(0.2=5.9)
A:
NA
C2:
PF0099518=Sec1=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]