BtaINT0146282 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000292 | TCIRG1
Description
T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3 [Source:HGNC Symbol;Acc:HGNC:11647]
Coordinates
chr29:46222221-46222670:+
Coord C1 exon
chr29:46222221-46222338
Coord A exon
chr29:46222339-46222492
Coord C2 exon
chr29:46222493-46222670
Length
154 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GCTCCCTCCCTCACCTGCAGAAC
3' ss Score
10.88
Exon sequences
Seq C1 exon
TTTGTCCTGTCCGAGGTGTTCATGCACCAGGCCATCCACACCATCGAGTTCTGCCTCGGCTGCATCTCCAACACGGCCTCCTACTTGCGCCTCTGGGCCCTAAGCCTGGCCCACGCCC
Seq A exon
GTGAGTCCCAGCGCCTGCCCCCACACATCTCCCATTGCTTCCCAGTGTCCCTGTCTGGAAAGAGGGGATGGTGGGGAGGTCCCCTGCTGACCCTTGTGGAGGATGGGCTTAGGGACGCCCGGGTGGTTCCCACCGCTCCCTCCCTCACCTGCAG
Seq C2 exon
AACTGTCGGAGGTCCTGTGGGCCATGGTGATGCGAGTTGGCTTGGGCCTGGGTGGCAAGATGGGCGTGGAGGCCCTGGTGCTGGTCCCCGTCTTTGCCGCCTTCGCCGTGATGACCGTGGCCATCCTGCTGGTGATGGAGGGGCTCTCGGCCTTCCTGCACGCGCTGCGGCTGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000292:ENSBTAT00000000367:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(9.6=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGTCCGAGGTGTTCAT
R:
CCCTCCATCACCAGCAGGAT
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]