BtaINT0146414 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007271 | TCTN2
Description
tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
Coordinates
chr17:54273525-54274153:-
Coord C1 exon
chr17:54274046-54274153
Coord A exon
chr17:54273602-54274045
Coord C2 exon
chr17:54273525-54273601
Length
444 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
TGTTCCAATCTCTTCTGTAGGTT
3' ss Score
9.8
Exon sequences
Seq C1 exon
TTTTCATTCCTTCTGTCATCCGCATGTCCGGCTCTGTGGTCAGCGCGTCCCTGGTCGGAGGCACCGAGGATGTGACCGTGTCCCTGACACAGCTGCGGGACGAGATGG
Seq A exon
GTAAAGAGTCTGACCTTTCCTTTGGGGAGGGAAGAGGTTGGGCCAGCTTCAGGCCGCCCAAGAAGCCTGGCCAGGTGGCATCCTCTGAGTCCCTTGGCGCTGTCCCCTGCAAAGTCGGGATGGGGGCTGCTGCTGTGGACCAGAGAACTAACAGACAGGGTGAGTAAAAGAAAGCTTGAAATTACAAGTTAGCATTCACTGAGCTATCCCATGTACTTAAATACATCACCTCATTTTCCTAATAAGAACAGTAATGTCTTTTAATTCTGTTTAACAAATGAAGACACTGAAGTTCAGAGAGGTTGTCACTGGTCGAAAGTCACACAGCTTGTAAAGAGTCCAATCCTAGGCTTGGAAAGGTGTTCCATCCTAGGAAACCCGACTCAAGAGTGCAGTACCTTGGTAGCTGGGCAATACTCTCTTGTGTTCCAATCTCTTCTGTAG
Seq C2 exon
GTTTATTGCCAGTTCCCACCTGTGGCGAGCTGAACAATGAGACAGGAGACTGGAGTTTGACTGTCACCCCCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007271:ENSBTAT00000009562:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATTCCTTCTGTCATCCGCA
R:
ACAGTGGGGGTGACAGTCAAA
Band lengths:
182-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development