BtaINT0149682 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047964 | TMEM210
Description
transmembrane protein 210 [Source:HGNC Symbol;Acc:HGNC:34059]
Coordinates
chr11:105918835-105919219:+
Coord C1 exon
chr11:105918835-105918970
Coord A exon
chr11:105918971-105919189
Coord C2 exon
chr11:105919190-105919219
Length
219 bp
Sequences
Splice sites
5' ss Seq
GGGGTGCGT
5' ss Score
5.27
3' ss Seq
CTTTATCCCCCCCACCCCAGTGA
3' ss Score
6.4
Exon sequences
Seq C1 exon
CTGGAGCCTACTGCGAGTGCAGCCTCGGCCTCAGCCGCGAGGCCCTCATCGCCCTGCTGGTGGTGCTGGCGGGCATCAGCGCTAGCTGCTTCTGCGCCCTGGTCATCGTGGCCGTTGGTGTCATTCGAGCCAAGGG
Seq A exon
GTGCGTGAATCCCAGGGCTGACCGGCGGGGGGCGGGTGGGGACTGTGGGTCAAGCTGTCCCCCCAGCCTCCCAGTCTCACCGGGTGAGGTCAGCAGGACTTGGGAAGGATGTCTCTCAGACTGGGTTAGGGAGAGGTGGAGGGGGGGCACCTCTGGACGCTTGGAGGCCAGCTGCGTTGTTCACAGACTCACGCCTCACCTTTATCCCCCCCACCCCAG
Seq C2 exon
TGAAACGTGCCCTGCACACATGGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047964:ENSBTAT00000065412:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF151951=TMEM210=PU(36.4=93.5)
A:
NA
C2:
PF151951=TMEM210=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCAGCCTCGGCCTC
R:
CTGCTGTCCATGTGTGCAGG
Band lengths:
152-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development