BtaINT0150388 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008342 | TMPRSS13
Description
transmembrane protease, serine 13 [Source:HGNC Symbol;Acc:HGNC:29808]
Coordinates
chr15:29004320-29009868:-
Coord C1 exon
chr15:29009696-29009868
Coord A exon
chr15:29004419-29009695
Coord C2 exon
chr15:29004320-29004418
Length
5277 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
GTCTTGAGGTCTTGTCGCAGCTC
3' ss Score
3.11
Exon sequences
Seq C1 exon
TACCCGGGAGAAGATTTTGGAGGGCTGGAAGGTGTACGTGGGCACCAACGATCTGCACCACCTGCCCGAGTCAGCCTCCGTCGCCCAGATCATCATCAACAGCAACTACTCAGATGATCAGGACGACTATGACATCGCCCTCATGCGGCTCTCCAAGCCCCTGACCCTGTCCG
Seq A exon
GTGAGTGAGCCCCTGCTCAGCCAGCACCCCTCGGTGCCGAACCTCTGCACTTTGTAGCATCCACAAACCCATCCCAGGGTCCAGAGCTTCCGCATGGCAGATGTCAGTCTTCGAGATCATTCAGTGGAACTCTATCTTATAATTGAGGGGACTGAGACCCAGAGATTGGAAATAAACTTGCCCCAATGACTCCTCTTCTATTTCAAGTTGGTGACAGAGCCAGGGTTTAGGTTCTGGGCTTCATTAAGATAAACAAATCGAATTGTTTCACTGGTACAGCCAGCACTTGACAGAGGCCAGACACCATGGTAAGTGTTTTACATCTACAATTTCATATAGTCTTCATTACCAGATCCTGTGAAGCAGGTACTATTATTAGCTTCATTTTCCCTTTGAGGAGAAGACCTTTAGAGAGAGAGAATTCCCTGAGGCCATGAAGTAATAAGGAGCAGCTTCAGGACTGGGTCCAGGTGGGTCTGCTTCGCAGGCCAACGTTCTTCCCACACTGCTCTGTACTGGCACATTGCCAACACCGAAGTTGCGAACACAATCAACATACCTATGCAACCAAACAGCCAACTGCTGCAAAGTTGGAGCTGAGACCTTGAGAACTAAATGGGGCTACAGAAAGGAAATGCTACCGAAATTCTCAGGAGATCAGTTTTCATTCATTACTTCATCTGCCCATTTGTTCACGTATCAAATACAGTGTATCTACTACCTAACGGCTCTGCAGCTCCCCAGCAAAGAGAACAAGACTGATGGCACGCATAAACAGCCGCTTAGAAGCTAGTGATGTGATGTCAGGGGCCACCTGGGGAGAGGGGCACGATGGCACAGATGTGAGCAGCTAAACAGTCTTGGCAGGCTAGACAGACTTTCAGAAGCCTTGGAGGGCTTCCTGGTTAGTCTAGCCTTTCTGGCGCTCTGGGCCTGTGAGCTGGCCTTTCCTGGCACATTAATTGCGGAGGCGGGGTTGGTCCTGAGTCAGAGCAGTTAGCTCATCAGAGTGGTGGGGGGAGGAGGAGTCCAATCCCCAACACAAGATTCGGTTGGGTGGGGCCAACCCAGAGCCACGCCCACCTCCGGCCACGCCCACGCTGTGAGCCCTCTCTGTGAGCGGAGGGGTGCCCTACTGCCGGTGCCTTGCCCCTTATGCACACATAAAAGGGGGTAGGCATTCTGTAGGACCAAAATAGGCCTTTCCAATCTTGTCAAACACAGACTCCATTTGGCTAACCGTCCGGACCTCGCTTGGCATCAACCCAAACCCCTATTAATATTATCTGATATTCCAAATCCAATTAAATAACTTGTAAAATGAAATTTATTATAGCATTACATGTGCTTTTCAGACTACAGCAGTCCCTCCCTAGACTCTGATAGCCACCCCTTCCTGCTCCCCACTTCTGGTCAAGAAGCATCTTTGTAGCATTATAAATCATAGCTAGGGTTTATGTTGGAGAAGGCAATGGCTCCCCACCCCAGTACTCTTGCCTGGAAAATCCCATGGACCGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCACAGAGTCGGACACGACTGAAGCAACTTAGCAGCAGCAGCCCCAGCAGCAGCAGGGTTTATGTAGTCCTATGGTCAGACCATGTGCCCTGATTTTTGGTTTAGAAATCAGAGCAGATTTTCTTAAACTGCCTGGTAGGCTGAGCACTTTGAAGTCACTGTACTAGCTGAGAAAGCTTGTGAAAACTCACTGATAAATTTAATTACCCCTTAAAAAACTCAAGTAGATATATACTAGTGTTACATGTTTTTAAGGCTGTATGTCTCAAAAATAGGTATAGACTAATTTTTTTTTTTGCGATACAGTAGGTTCTTATTTATTTTTTTAATTAATTAATTTTTTTATTGAAAGATAATTGCTTTACAGAATTTTGTTGTTTTCTGTCAAACCTCAACATGAATCAGCTATAGGTATACGTATATCTCCTTCCTTTTGAACTTCCCTTCCATCTCCCTCCCCATCCCACCCCTCTAGGTTGTTACAGAGCCCCTGTTTGAGTTTCCTGAGCCATACAGCAAATCCCTGTTGGCTATCTATTTTACATATGGTAGTAAGTTTCCATGTTACTCTCTCCATGCATCTCACCCTCTCCTTCCCTCTCCCCATGTCCATAAATCTATTCTCTATGTCTGTTTCTCCATTGCTGTCCTGTAAGTAAATTCTTGAGTGCCATTTTTCTAGATTCCGTATATATGTGTTAGAACATGATATTTCTCTTTCTCTTTCTGACTCACTTCACTCTGTATAATAGGTTCTAGGTTCATCCACCTCATCAGAACTGACTCAAAGGCATTCCTTTTTATGGCTGAGTAATATTCTATTGTGTATATGTACCACAACTTCTTTATCCACTCATCTGTTGATGGTCATCTAGGTTGCTTCCATGTTCTAGCTATTGTAAATAGTGCTGTAATGAACAATGGGATACATGTGTCTTTTTCAATTTTGGTTTCCTCAGGGTATATGCCTAGGAGTGGGATTGTTGGCTCATATGGTGGTTTTATTCCTAGTTTTTTAAGGAATCTCCATACTGTCTTCCATAGTGGCTGTATCAATTTACATTCCCACCAACAGTGCAAGAACATTCCCTTTTCTCCACACCCTCTCCAGCATTTACTATTTGTAGACTTTTTGATGATGGCCATTCTGACCAGTGTGAGGTGATATCTCGTAGTTTTGATTTGCATTTCTCTAATAATGAGTGATGTTGAGCATCTTTTCCTGTGTTTGTTACCCATCTGTATTTTTTCTCTGGTGAAATGTCTGTTTAGGTTTTTTTCCCACTTTGGGGTTGGGTTGTTTGTTTTTCTGGCATTTGGTTGTATGAGCTGCTTGTATATTTTGGAAATTAACCCTTTGTCAGTTGTTTCATTTGCTATTATTTTCTCCCATTCTGAGGGTTGTCTTTTCACCTTGCTTATAGTTTCCTTTGCTGTGCAAAAGCTTTTAAGTTAATCAGGTCCCACTTGTTTATTTTTGTTTTTATTTCCATTACTCTAGGAGGTGGGTCATAGAGGATCTTGCTTTGATTTATGTCATTGAGTGCTCTGCCTATGTTTTCCTTTAAGAGTTTTATAGTTTCTGGTCTTACATTTAGGTCTTTAATCCACTTTGAGTTTATTTTTGTATATGGTATTAGGAAGTGTTCTAATTTCATTCTTTCACATGTAGCTGTCCAGTTTTCCCAGCACCATTTATTGAAGAGGCCGTCTTTGCCCCATTATATAGTCTTGCCTCCTTTATAAAAAACAAGGTTCCCATAGGTGCATGGGTTTATTTCTGGGCTTCCTATCTTGTTCCATTGGTCTATATTTCTGTTTTTGTGCCAGTATCATACTGTCTTGATGACTGTAGCTTTGTAGTACAATCTTAAGTCAGGAAGCTTGATTCCTCCAGCTGCATTCTTCTTTCTTTCTCTTCTTTCTCAAGACTGCTTTGGCTATTCAGGGTCTTTTGTGTTTCCATATGAATTGTGAATTTTTTTTTTCTAGTTCTGTGAAAAATGTCGTTGGTAATTTGATAGGGATTGCATTGAATCTGTAGATTGCATTTGGTAATATAGTCATTTTCACAATATTGATTCTTCCTACCCAGGAACATGGTATATCTCTCCATCTGTTTATGTCATCTTTGATTTCTTTCATTAGTGTCTTGTAATTTTCTGTGTACAGTTCTTTCATCTCCTTAGGTAAGTTTATTCCTAGATATTTAATTCTCTTTGTTGCAATGGTAAATGAGACTGACTCATTAATTTCTCTTTCTGATTTTTCATTGTTAGTTTACAGAAATGCAAGTGATTTCTGTGTATTGATTTTGTACCCTGCAACTTTGCTAAATTCACTGATTAGCTCTAGTAATTTTCTGATACTCTCTTTAGGGTTTTCTATGTACAGTATCATGTCATCTGTCATCTGAGAGATTTACTTTTTCTTTTCAGTCTGGGTTCCTTTTATCTCTTTTCCTTCTCTGATTGCTATAGGTAGGACTTCCAGAACTATGTCGAATAATAGTGGGGAAAGTGGACACCCTTGTCTTGTTCCTGATCTTAGGGGGAATGCTCTCAGAGGCATAGACTATTTTAAGTCGTATTTCGTGGTTTTGGTTAGTAATTGGTGCCATGTCTTCATTTACTTTTTGTTTACACTCTAGCAGACAAATGTGTTAGACTCCCAGTTTATAGGAAAAAAATTTTACATTTATCCTCCCTCCCTCCCTCTCTGCCCCCTCCCTCCCTTCCTCCTTCCCTCCTTCCCTTCCTTTCTTCCTAGGAGCACTTTATATGTATCAGGCACAATTCTAGGTACAGGAAGCTGCAGCATGCATAACACTGCGAATATCCTCTCTAGGGCTTCCCCAGTGGCTCAGGGGTAAAGAATTTGCCTGTAATGCAGGGGACTTAGGTTTTATCCCTGGGGCGGGAAAATCCCCTTGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGTTTGGGAAATCACTTGGACAGAGGATCCTGGCGGGCTACAATCCATACGGTCGCAAAAGAGTCAGACTAAGCAACTAAACAACAACAGCAAATATCCTTTCTATTAACTCTTTTCCACTTGCAAACTGGTCAGTGCTCTAGTCCACAGGGGAACGTTAGTCCTCATAGGGAACTTATGTACTGATGCACAATAGCACCTTCTGTATGATTCTGAGTGCAGGAGCGAGTGAGCAGGAGTTTAGTGGGCTGTGCCTCTAGGGGTTTGCTCTTCGAACTTGGTGAGGTTGTCTCACCCTGGAGGGAGAGCCTCAGGCCCTGGCCAACCAGGGTTGCCCTCTCCAGACCAAGCAGGACCCACCATTGAGACATCTTGGCAATAATACCAGGCATTTAGCCGGCACTGCTCCTTGCTCTGGGGGACAGGTGTGGAAGAGACTCAGTGAGGACAGCCGCTCTTGGAGTGGAGACACCCTCAGCCACCCAGTATCAGCTTGGCACAGGGAAACTCCAAGGCACATGCATATGCCCACATGGCACCACTGAAAAATCAGAATGTCTGGGGGACTCTGAGAGTACGCTGAAGACTGGAGGGTCAAGATAAAGTGATTGAATTTCTTGCCTGGTCAATTGAAGGCCTTGAAAGATTCAGGAGCACTCTAGGGGTAAGGAGGATGTCCTAGGATGTTGGTATTCTTGTCCCTCCTCGCACCCCTCCAAAACCTCCAGCCTCTTCCCTTCACTGATGTCTTGAGGTCTTGTCGCAG
Seq C2 exon
CTCATGTCCACCCTGCCTGCCTCCCCATGCACGGACAGACCTTCGGCCTCAATGAGATCTGCTGGATCACAGGCTTTGGCAAGACCAAGGAGACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008342:ENSBTAT00000010989:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(25.3=100)
A:
NA
C2:
PF0008921=Trypsin=FE(14.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development