BtaINT0150454 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017650 | TMPRSS5
Description
transmembrane protease, serine 5 [Source:HGNC Symbol;Acc:HGNC:14908]
Coordinates
chr15:24585880-24587490:-
Coord C1 exon
chr15:24587368-24587490
Coord A exon
chr15:24586019-24587367
Coord C2 exon
chr15:24585880-24586018
Length
1349 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTTTCATGCCGTGGTCTCAGTAT
3' ss Score
4.73
Exon sequences
Seq C1 exon
AAGTGCTGTATCTGTGGCCAGCTGCCTCTCAGCCCACTCCTGAAACCCTGCAGGATGAGATGACTTTGAACTGCTCCGAGGCCAGCAGTGAGGAAGCCCTGCTCCCCTCGATTCCCAGAACAG
Seq A exon
GTGAGCCACACCCCCAAGGTGGGGAGACTGCCCTCCCCAACCCCAGGCCCAGGGCCCCTGCACAGCGCTGGGATCCTTCCAGTTTACTGTCATCCACCTGCATCTCCTGTGCTGTGAGGGTGAGGCCCTCGTGCAGCCTCCAGGAGCTGATCTCTGATTCAGGGCTTTCAGCACTCCCCGGGGACTGTTTTGATCCCTAGTGGAGGCACAGCTAAAAACCCAGGCTGCCAGGAGAGGTGGCGACTTGCCATTTGGACAGAGGGAGCCTGCCATGTGGGGCAAGAGGAGCCAGGTGTGTGTTGGGGGCCAGTGCGTGGTGGACACGGGTCTTGACCCAGCGGCAAAGTGTAGAGGCTGGAAACATCACACCACACTATCTCCCCATCCTCCGCCCTGAATTTTCTCACCTCCCCTACAGGTAAGGGTGGAGGGTCAGAAGATACGGTGCTGCAAAGCCTGGGGTTAGAATCAGTTACAGAAATTATTTAGGATCGGCTTGCCTGCCTTTGCTAGCTGTGTGTGCCTCTGAATACATTACTTCTTTGAGCTTCCATGTCCTTCTCCATGAAGTGGAGATAAAAATATTTACCGCGTGAAGCTGTAAGCATAATAAGAGCATAAAGTAAAGGAGCTTACCATAGAGCCCGGAAAAAGCAGATGCTCAATAAGTGGGCACCATCACCAGTACTGTCACAAGATTTGAAATTGGATGCTGCTGCTGCTACTGCTGCTAAGTCGCTTCAGTTGTGTCTGACTCTGTGTGACCACAGAGACGGCACCCACCAGGCTCCCCGGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAAAGGATGAAAGTAAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCTACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAATAGTGGAGTGGGTTGCCATTGCCTTCTCCAGAAATCGGATGACCTGGCTCCATCACTTGCAGATCCTGTGACCTAGGGCAGGTCGCTTGATCTTCGTGCCTTACTTCCTGCTGCAGAATGGGGAGGATGGGCATTCTCATGCCATCGCGCGGCTGTGACCCTTGGTGATGGAGCACGTGAAAAGCGCTTGGTTAAACACAAACCTGAAGGGGCAGCACAGAGAGAGGGGTTCTTTTGTTCTCAGCACTGGCTGGCTCCCGGGGGAACAGTGAGCCCGACATTGGGTGACCCAGGCGATCATGAAGGCCTTTTCAGGCCCCACGGTTGAGGGGTCCAGCTCCTCCATCCTGCTGCAGATGGGAAGTGGCTTTCATGCCGTGGTCTCAG
Seq C2 exon
TATCTTTCAGAATAAACACTTCTGAGGACTTCTTGCTGGAAGTACAGCTGAGGGCCCGGCAAGACTGGCTGCTGGTGTGCCATGAGGGCTGGAGCTCTGCCCTGGGGGCACGTGTCTGCAGGAGCCTCGGACATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017650:ENSBTAT00000023479:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154941=SRCR_2=PU(39.8=83.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCTGTATCTGTGGCCAG
R:
CTAAGATGTCCGAGGCTCCTG
Band lengths:
262-1611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development