BtaINT0150467 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032152 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr5:75871066-75873470:-
Coord C1 exon
chr5:75873199-75873470
Coord A exon
chr5:75871203-75873198
Coord C2 exon
chr5:75871066-75871202
Length
1996 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CCCTCAATCCTGCCGGGCAGGCC
3' ss Score
6.86
Exon sequences
Seq C1 exon
CATGGCATCCCCAGCGCTGTGGACCGTGTTCCTGGGCAAAGTGTGGCAGAGCTCACGCTGGCCGGGAGAGGTGTCCTTCAAAGTGAGCCGCCTGCTCCTGCACCCATACCACGAGGAGGACAGCCACGACTACGACGTGGCCCTGCTGCAGCTTGACCACCCTGTGGTGCGCTCGGCTACTGTGCAGCCCATCTGCCTGCCTGCCCGCTCCCACTTTTTCGAGGCGGGCCTGCACTGCTGGATCACAGGCTGGGGTGCCCTGCGAGAAGGCG
Seq A exon
GTGAGCTGGACTGCGGGCAGGGGAGGTGGGGTGGGTCTGGCTCGCCTAATTTCGGGGCCTGGAAGGGAGTTGGCAAGGGACCCTGGGGCTCCACTCTTGCTAGTCCTGGATTAAATGGGGTAGTATTTCATAGAAAAAAAAAAAGCTTTTACTACGGCCATGGGTTGTCTCCCTGGCCCTTCCCTTCCTTCCAGAAGGGCAGTTCAGTTCAGTTCAGTTCAGTCGCTCAGTCACGTCCGACTCCTTTCGACCCCATGAATTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCCGGAGTTCACTCAGACTCATGTCCATTGAGTCGGTGATGCCATCCAGCCATCTCCTCTGTCGTCCCCTTCTCCTCCTGCCCCCATTCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCGCATCAGGTGGCCAAAGTATTGGAGTTTCAATACCTTTCAAGTGAAGGGCACTTAAGGAGAACCAAAGTCATGGGAGGCGATCCTGGGGGATATGTGTGGGGTGACAGGGCAGGCCAGGGACCCCATGGCCCTTGGGCAAGCTCCAACCCTGTGCTTCTTGGACAATGGAGGGTATATGTCTGTGTTGGGGGGAGACTTTTAATTATTAACACTTATCACATGGATGTTAGATTTTAGGGCAACATGATTTCATTTAATCCATCCAACAACTCTAGTTATTGGTTATCATGGACCCCATCTTAAGGGTGGGAAAACAGAGACGTTTAGTGTTGACTCAAAGTCACATAGCCAGGGAGAGTTAGAATAGAGACTAGAACCCAGGACTGTCTGACCCCAGAGACTCTGCTGTTCCTGCTACTGCCTCTCAGAAACATGAGTTTCTGTCCTTCCCTCCTGCGCTGACCAGAGGCTGCTGTCCATAGAGGCCAGCTCTCAGTTCTGTACACGACTACAGCCATGCCCTGCACCCTCCGTGGTGGTGGCTTTCAGGAGTGTATATTGTGCTTTACAATCTGGAGGTGGGTGAGGTTGAGGGATAATGTAAAGATGGAGAAGCTGAGGCTCACGTGTAAAGTGACTTGTCCAAGAGGATGATAGAGAACAGTGGTCAAGGATCAGTCCACTTGCTCATTCATTCATTCAGTGACACATTTGTGAGCATCTACTATATGGCGGGCATTGAGTTGGACAAAGCAGTATAAAAATGAATAGGAGACAGTGCTAAGAGCTGACACGGATGGGGGTGTGGGGGCAACGGCAGCCCAGAGGAGGGGTGGGCTGAGCTGAGGCTTGCAGGGTGGGTCAGCAGTGTCCCAGCAAAGCAGAAAGGCGTTTCTGGTAAGAGCATAGGTGGCAACCCACCTGAGAACACCCAGCACCAGAGGGGAGCCGGGAGCTGGTGGATCTGGGTGAGGACAGGCAGGAAGGACAGGCAGGGGATCTCAGTCAGGGTCTTGAGCCAAAATTCCTACTCCTGACCTGAATGAAGGTCTCAGGGCTTCAGAAAAGAAAACCAGCGTCTGGGTCCCACCCCAGCTGAACAGACCAGATCTTCCAGTGGAGCTAGGCACAGGGTGTATAGTGAAATTCCATGGTGGGGTGGCGGGGTCCAAACACGCATTCTCGTGGAGAAGCGCTGGCTGGACAGTGAGCAGAGGCTGACTGAGTTTTAGGTGGGAGCAAAAGCGTGAGGTGTGTGCTCTGGAAAAATTCCCCAGGGCTGTCACAGAGAAGAGGGGAGGTGGCCAAGAGGCCTCAGGCCTCAGGCCACCAGGGGTGGAGGAGAACCTGAGGACACTGGCCCTGGTGGGTGGGTGGGGGGCTCTGTCCCCAAGAGCCACTTGGAGAAGGAGCCAGAACAGAGCGTCAGTGAGGGGGAGGGCGGAGATGGGAGGGAGGGCAGAGCAGGACGAGGAAGGAGCTCTTGAGATACGAAAGGAAAAGCCAAGAGAAGAGACGGAGCCCCGGGCACCTCAGACCCTCTTACCTTTGCCCTCAATCCTGCCGGGCAG
Seq C2 exon
GCCCCACCAGCAACGGCCTGCAGAAGGTGGACGTGCAGCTGATCCCGCAGGACCTGTGCAGCGAGGCCTACCGCTACCAGGTGACACCCCGCATGCTGTGCGCCGGCTACCGCAACGGCAAGAAGGATGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032152:ENSBTAT00000045605:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAGAGGTGTCCTTCAAAG
R:
CTGGCAGGCATCCTTCTTGC
Band lengths:
347-2343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]