BtaINT0150503 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22481797-22482148:-
Coord C1 exon
chr7:22482081-22482148
Coord A exon
chr7:22481973-22482080
Coord C2 exon
chr7:22481797-22481972
Length
108 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GCCAATGTCCTCCCCACCAGGGA
3' ss Score
8.06
Exon sequences
Seq C1 exon
TTTGTCAGCAGCTTTCAAGAGACAGAGTTGGAGTCCAGCTGCCTGGGCTGCACGGTGCTGAGTTACTG
Seq A exon
GTGAGTGAGGGCCTCCTGGGGGTAAAGGATCTTGGGGGACCCCTGGATTTGCAGAGAATTCCAGCTGAGAAGTGCCCTCCCTCTCAAGGCCAATGTCCTCCCCACCAG
Seq C2 exon
GGAGGGCAACGCCAGCGTCCTGGTGCGTTTCCGGCTGCACTTTCTGCTGCTGGCCCTGTGGACGCCAAGCCCAGGCCTGGAGGAGCAGCTATTGCAGCGGGGACTTCATGCGAGGCTGCAGGGCCTCGGCATCCCCCTAGCCCCCTATGGCACCATTGTGTCTGCCCAGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718:ENSBTAT00000000958:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(28.2=100)
A:
NA
C2:
PF0139015=SEA=PD(20.5=26.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCAGCAGCTTTCAAGAGACA
R:
TGTGAGCTGGGCAGACACAAT
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]