BtaINT0150964 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015650 | TNN
Description
tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
Coordinates
chr16:57820862-57821271:+
Coord C1 exon
chr16:57820862-57820964
Coord A exon
chr16:57820965-57820995
Coord C2 exon
chr16:57820996-57821271
Length
31 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGCT
5' ss Score
2.88
3' ss Seq
TTTCTCCAAATTGATTGTTGTTT
3' ss Score
-3.3
Exon sequences
Seq C1 exon
GAGTCAAAGTCTTTATGGGGACAGAACACATATGTCCATGATGCAGTTAGAGCACGCAAGATGGAAATCCCACGAAACATGAAAGGGTGTCACCCCAAGCAAG
Seq A exon
GTGGCTGTGATTTTCTCCAAATTGATTGTTG
Seq C2 exon
TTTTCTTTTCAGACATTGACAGCCCCCAAAACCTGGTGACCAAGCAGGTGACAGAGAACACGGCCACTGTCTCCTGGGACCCGGTGCAGGCCGTCATCGACAGGTACCTGGTGCGCTACACCTCTGCTGATGGAGACACCAGGGAGGTTCCGGTGGGGAAGGAGCAGAGCAGCACCGTCCTGACGGGCCTGAGGCCGGGCGTGGAGTACACGGTCCACGTGTGGGCCCAGAAGGGGGACCGGGAGAGCAGGAAGGCCGACACCAAGGCCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015650:ENSBTAT00000020785:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.409
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004116=fn3=WD(100=84.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCAGTTAGAGCACGCAA
R:
CCTGCTTGGTCACCAGGTTTT
Band lengths:
113-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development