BtaINT0151340 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001444 | TNXB
Description
tenascin-X precursor [Source:RefSeq peptide;Acc:NP_777128]
Coordinates
chr23:27092129-27093057:-
Coord C1 exon
chr23:27092770-27093057
Coord A exon
chr23:27092408-27092769
Coord C2 exon
chr23:27092129-27092407
Length
362 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
TGCACTTCTCTCTTGTCCAGTCC
3' ss Score
8.65
Exon sequences
Seq C1 exon
CCTCCCTGACTACGGAGCGTCCCCTGGCACCCCGCCTAGGGGAGCTGGCGGTGGCAGTCGTGACCTCGGACACAGCGCGTCTCTCGTGGACGGTGGAGCAGGGGCCCTTTGACTCCTTCCTGGTCCAGTACAAGGATGTACAGGGGCAGCCCCAGGCAGTGCCCGTGGCTGGAGACCTCCGAGAGGTCACAGTTTCGAGTCTGGCCCCCGGCCGCAAGTACAAGTTCCTCCTGTTCGGACTCCGGGATGAGAAACGACACGGCCCAGTTTCTGCAGATGCAAAGACTC
Seq A exon
GTGAGTGAGGGCTGGAGGCCACCTTTGCCATCTGACCATCCTAAACTGACCATCCTCCACTCCCTTGTGGAATTTCGCGTTTCCATGCTCCACACCCCAGACCCGTTTATTTACGGGGTTCAGTGAAATCCAAGTCCCGAGTACCCAGTTACCCTCTCGTTCCCATCCTACTCCTATATCCCCAGGGACACTTGTTTTCTTCCCTGGCCCCTCTTTAATCCCTACTCCTCTGCCTCCCCTCTTCCTGACCTATGACTTTGTCACCCCCTCCCAGCACCCAGAGCCAGCACCTAGACCCTAGCACCCTGAGGAGGCTGCCTGCTTCATTTCTGTCACATTCCATGCACTTCTCTCTTGTCCAG
Seq C2 exon
TCCCAGACACAAAACCTGCTCCCCGCCTGGGGGAGCTGACGGTGACAGATGTGACCCCGGACTCCGTGGGCCTCTCCTGGACAGTCCCCGAGGGTGAATTCGACTCCTTCGTGGTCCAGTACAAGGACAGGGACGGGCAGCCCCGCGTGGTGCCTGTGGCTGCCAACCAGCGCGAGGTCACCGTCCCCGGCCTGGAGCCCAATAGGAAATACAAGTTCCTGCTCTATGGGCTGGTAGGCAGGAAACGACTGGGCCCCATTTCCGCTGAAGGCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001444:ENSBTAT00000001893:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.426
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=81.4)
A:
NA
C2:
PF0004116=fn3=WD(100=88.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGTTTCGAGTCTGGCC
R:
TTTCCTGCCTACCAGCCCATA
Band lengths:
348-710
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]