BtaINT0151354 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001444 | TNXB
Description
tenascin-X precursor [Source:RefSeq peptide;Acc:NP_777128]
Coordinates
chr23:27086301-27086650:-
Coord C1 exon
chr23:27086554-27086650
Coord A exon
chr23:27086463-27086553
Coord C2 exon
chr23:27086301-27086462
Length
91 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CACAAACTCCGCACCCACAGGCA
3' ss Score
6.08
Exon sequences
Seq C1 exon
GTATTCCAGCGCCGCATGGATGGAAAAACGGACTTCTGGAGGGACTGGGAGGACTACGCCCATGGTTTTGGGAATATCTCTGGGGAGTTCTGGCTGG
Seq A exon
GTGAGTGTCTCACAGGAATTGGGGGACCAGGGAAGGGATTGGGGCCCTGTGGACTCACACTGCCCCACGAGCACAAACTCCGCACCCACAG
Seq C2 exon
GCAATGAGGCCCTGCACAGCCTGACCAAAGCCGGCGACTACTCCTTGCGCGTGGACCTGCGGGCTGGGGACGAGGCTGTGTTTGCCCAGTACGACTCCTTCCAAGTGGACTCCGCCGATGAGTACTACCGCCTCCACCTGGAAGGCTACCATGGCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001444:ENSBTAT00000001893:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(15.2=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTACGCCCATGGTTTTG
R:
GGTAGTACTCATCGGCGGAGT
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]