BtaINT0152629 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009948 | TRIM25
Description
Bos taurus tripartite motif containing 25 (TRIM25), mRNA. [Source:RefSeq mRNA;Acc:NM_001100336]
Coordinates
chr19:7942726-7943185:-
Coord C1 exon
chr19:7943159-7943185
Coord A exon
chr19:7942804-7943158
Coord C2 exon
chr19:7942726-7942803
Length
355 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
CCTCTCTTCCCTTATCCCAGGCT
3' ss Score
7.7
Exon sequences
Seq C1 exon
AAGAAGAGAAGAAGCCCAGGAAACCTG
Seq A exon
GTAAGTTATGCATTTCTGCATCTTTTAGTTCCTTGAGTGCCCGAGTGCAGAACTAAATGCCAGCAAGGAAAGCTGAGCTGTGGGCTGGTGTGTGTTGGGGGAGGGTCTGAGATGGGCGTGGGCTCCATGACTTTGACTTGTGCTGGCCGCTGGGTCTGGGCTTGGGGGTGAGGATAAGTGGACGTGCACGAGACCAGTATGATGCATGTTGCCCTGTCTGGACTCTCTTGTGTCACCCTGGCGGTCCAGGTGTGTGTTTGTGGAGGCAGCTCTTGAGAAATAGTGTGGGAGGGATTCCAGGCCATCAGGTCACTCTGTTGTTTCCCCAACTCATACCTCTCTTCCCTTATCCCAG
Seq C2 exon
GCTCTGCCTTACTCAACAAGCCTGTCACCTTTGGATCCTCGGAACACTTAGTGAATCCCAAACTAACTGTCCAGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009948:ENSBTAT00000013121:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]