BtaINT0154093 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017783 | TSPYL2
Description
TSPYL2; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BKJ1]
Coordinates
chrX:95959925-95960290:+
Coord C1 exon
chrX:95959925-95960070
Coord A exon
chrX:95960071-95960192
Coord C2 exon
chrX:95960193-95960290
Length
122 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
TCCCCTGTCTCTTTCAACAGATT
3' ss Score
12.69
Exon sequences
Seq C1 exon
GCCGACTGGTGTCTCACTCCACCCCAATTCGCTGGCACCGGGGCCAGGAACCTCGGGCCCACAGGCACGGGAACCAGGACGCCAACCACAGCTTCTTCAGCTGGTTCTCAAACCATAGCCTCCCAGAGGCTGACAGGATTGCTGAG
Seq A exon
GTGGGGCCCCTCCTGGCATTACCAGGGAAAACCTTGCTAGGCTTACCCTTAGGTGCCTGGGGGATTGGGAGTAGCCTCTGGGACTTGTGCTCATAGCTTTCTTCCCCTGTCTCTTTCAACAG
Seq C2 exon
ATTATCAAGAATGACCTGTGGGTTAACCCTGTGCGTTACTACATGATGGGAGAAGGGGGCTACAGAACAAGCAGAAAGAAGCAAGAAAAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017783:ENSBTAT00000023648:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.394
Domain overlap (PFAM):
C1:
PF0095613=NAP=FE(25.7=100)
A:
NA
C2:
PF0095613=NAP=PD(9.1=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGACTGGTGTCTCACTCC
R:
TTCTTCTTTTTCTTGCTTCTTTCTGC
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]