BtaINT0154412 @ bosTau6
Intron Retention
Gene
ENSBTAG00000033010 | TTC27
Description
tetratricopeptide repeat domain 27 [Source:HGNC Symbol;Acc:HGNC:25986]
Coordinates
chr11:15248215-15252476:+
Coord C1 exon
chr11:15248215-15248327
Coord A exon
chr11:15248328-15252409
Coord C2 exon
chr11:15252410-15252476
Length
4082 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TTAATTTTTTAAATTTAAAGCAC
3' ss Score
5.29
Exon sequences
Seq C1 exon
AATCTTGAGCTCAATGATGATACCGTTCTAAATGAGATAAAGTTAGCAGATTGTGAACAGTTTCAGATGCCTGATCTATGTGCTGAAGAGCTTGCTGTTATCCTTGGAATCTG
Seq A exon
GTAAGTTAATGACTTATTTGGCCACCTTGAATTTCTTGCGTATTGATTCTCTTGTGTTGCGGAAATCTTTGTTCAGAAGGTCCCCAGAGTTCTGGGTGAATGAGTCTTGTAACGGTTATGAAGATAGAGAAGAGTTGGGCAACCAATGAAAGGGTTAGAGATTAGGACTCTCCTGTAAGTTGGTATACTTACCCGTCTCTTTGCTTGGTAAAGAAAATTCCTTCTGTTAGCCTTGGCTGGGCTTCCCTTGTGGCTCAGCTGGTAAAGAATGTGCCTGCAAAGCAGGAGACCTGGGTTCCATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAAAGGCCACCTGAATAGAATCCTAATGAAATATTTAGGAGAGGTGACTACTTTGATCTTTGAGGACATGTATATTCAGAGGATAGAATTTTTAATATAGTAGAACCTTATGTGTAGTAGAAATCGTTTTTCATTTTATGTTTTAAAGTGATTTCAAATTTGGGCAAAAGTTGCAAGGGCAAGGCATTGCAAAGACTTTTGAGAATGATTTTTTGACATGACATTCTGTCACCGCTAAATACTTTAGTGTGTGTCTTCAACAAACAAGGGAGCTTCTGTGCATAACCATGATACATTTATCAAAATCAGGAAATTAGCACTCATGCTTTACTATCACATTGTACTCAGACCCCATTCAAGTTTTGCCAGTTGTCCCAGTAATCTCCTTTATAGCACAGGATCCAGTCTGGAACATATGTGTTACATTTATGTTTGTATTCTTTCTGTCAGTTTGGAATAGTTCTTCATTTTTGCTTGACTTTTATGATCTTGACACTTTGGAAATTTATAAGCCAGTTATTCTGTACAATTACCCTCAACTTGAATTTTGTCTGATTCAGTTCAGTTCAGTTCAGTTGTTCAGTCGTGTCCGACTCTGTGACCCCATGAACTGCAATACACCAGGCCTCCCTGTCCATCACCAACTGCTGGAGTTCACCCAAACCCATGTCCATTGAGTTGGTGATGCCATCCAACCATCTCATCCTGTCATCCCCTTCTCCTGCCCTCAATCTTTCCCAGCGTCAGGGTCTTTTCAAATGAATCAGCTCTTCGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAGCATCAGTCCTTCCAATGAATATTCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGCATTCTCAAGCGTCTTCTCCAACTCCACAGTTCAAAAGCATCAATTCTTCGTCGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACTGGAAAAATCATAGCCTCGACTAGATGGACCTTTGTTGACAAAGTAATGTTTCTGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTTTTCCCAAGGAGTAAGCGTCTTTTAATTTCATGGCTGCAGTTGCCATCTGCAGTGATTTTGGAACACAGAAAAAATAAAGTCAGCCACTGTTTCACTGTTTCCCCATCTATTTGCCATGAAGTGATGGGACCGGATGCCATGATCTTCGTTTTCTGAATGTTGAGCTTTAAGTCAACTTTTTTCACTCTCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCATCAAGAGGCTCTTTAGTTCTTCTTCACTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTTCCGGCAGTCTTGATTCCAGCCTGTGCTTCCTCCAGCCCAGTGTTTCGAATGATATACTCTGCATTGTCTAATTTAAAAAATATATATACAATTAAATTCACATTGTGGGACTTCCTTGGTGGCTCAGTGGTAAAGAATCCAACTGCCAGTGCAGGAGACACAGGTTTGATCCCTGGATCGGGAAGATCCCACATGCCATGGAGCAACTAAGTCCCTGGGCCGTAACTCCTGAGTCTGTGCACTAGAGCTAGATTCTGGGAACCGCAACTACTGAGCCAACATGCTGCAACTGCTGAAGCTCCCTGATACTCCCTGGAGCCTGTGCTCCCAGCAAGAGAAGCCACCGCAGTGAGAGCCCCACGCACCACGACTAGAGACTGGCAGCTGTCCCCTACAACTAGAGAAGAGCCTGCACAGCAGTGACGACCTAGCACAGCCAAAAATAAATAAATTCACATGCTGCACCATTAGCAAGGGTATCGGAGAAGGGAAGTTTTGTGGTTCTTATAGCATCCCAGCAAGTGGAACACAATTTTGAATTTTATTTTCATTCTTAATACAAATAATATGTACATATAAAATAACTTATGTAATATATAAACATAAGTTATATAATGTAATAATAACACGAATCCACCTCCCAGTTTAAGAACTTGAAGATTGCAAATACCACTAGCTCAGTCTGTGTGCTTCTTTCCCATCTCATCTTCCTTCTTGTCTTAAAAGGTAATCAATGTCCTAAATTTTGTCTTTGTCAATTTCTTGCCTTTTCAGGAAATATATTTACTCACATGTCTTTTATACTTCTTAGTCAATTCTTTTATTTGTCTTTCAGCTTTATAAAAGCGGTATGTTACTATATGCAGTCTTCTGTGATTTGTTTTTTTCTCTCACCAATGTCTTTATGTGACTCATCCGTGTTGTTACATATAGCTGCAGTTTACTCTGCAGTGTATCTTTCTGTTGGTATTTTACAGTGTATTGATTTCCTTTTTGGACATTGGATTGTTAACAGATTTTTCCTGTTACACACAATATTACTATGGATATTTGTGTGTATGCTTCCCGGTACAGCCATTGAATTTCTGTGGGCTCTATATCTAGGCTGGAATTACTGAGGTTAGGATATGTGAATGTTCACTTTATAAGATAGTGCTGAATTGTTTTCCAAAATTATTCATACTTGGATCAGCAAGCTCTAAGAATTCTCAATGTTCTGCCTCTTTGAGAACTTCTTAATTTTTGCCTGTCTCATGGTGATAGTAATTTTTTTTTTGCATGAGTTTAATAAATAGGCATTGGTGCCATATTAATTCTTTTCATTTTCTTTGTGGAGTGGCACAGGTTAGATTTTGTTTTTTCTTATAAAATAAATTGTGTTAACATTTAGTACACCACCACATTTACTTGTTAGCATTTTATTACTTTTGTGCTTATCTTTGGCACAGTCATCTCTATATCTGTAAATAATACAATAATATTATAATATGTGAGGAGAGTGAAAAAGTTGGCTTAAAGCTTAACATTCAGAAAACTAAGATCATGGCATCCAGTCCCATCAATCATGGTAAATAGATGGGGAAACAGTGGCTGACTTTATTTTTCTGGGTTCCAAAATCACTGCAGATGGTGATTGCAGCCATGAATTTAAAAGACACTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGACAGCATATTCAAAAGCAGAGACATTACTTTGTCAACAAAGGTCCATCTAGTCAAGGCTATGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGTGCCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAATCCCTAGGACTGCAAGGAGATCCAACCAGTCCATTCTAAAGGAGATCAGTCCTGGGTGTTCATTGGAAGGACTGATGTTGAGGCTGAAACTCCAATACCTTGGCCATCTCATGCGAAGAGCTGACTCATTAGAAAAGACCCTGGTGCTGGGAAAGATTGAGGGCAAGAGGAGAAGGGGACGACAGAGGATGAGATGGTTGGATGGCATCATCGACTTGATGGGCATGGGTTTGGTGGACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGTGTGCTGTGGTCCATGGGGTTGCAAAGAGTCAGACATGACTGAGCGACTGAACTGAACTGAATGTGCTTTCAAATATATAAATACAGTTTACTTGCTTCCTTAAAAATTGTATTTGATTCATTATGACATGCATTCTGGGATTGATTTGCTTTTTTTAATTTTTTAAATTTAAAG
Seq C2 exon
CACAGATTTCCAAAAGAATAACCCAGTGCATAAGTTAACTGAAGAGGAACTGCTGGCATTTACATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000033010:ENSBTAT00000046862:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development