BtaINT0154682 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018710 | TTF1
Description
Bos taurus transcription termination factor, RNA polymerase I (TTF1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102083]
Coordinates
chr11:102485897-102486235:-
Coord C1 exon
chr11:102486055-102486235
Coord A exon
chr11:102485910-102486054
Coord C2 exon
chr11:102485897-102485909
Length
145 bp
Sequences
Splice sites
5' ss Seq
AAGTTAAGC
5' ss Score
1.71
3' ss Seq
ACATTTAAACATTGTTTCACATT
3' ss Score
-0.32
Exon sequences
Seq C1 exon
AGATCATAGACTACCTTTATGAGACTAGTCTCCCGCTGCTTAAAGAGAAGTTGGAAAAGAAGATGGAGAAAAAAGGGACTGAGATCCAGGCTCCAGCAGCCCCTAAGCCTGTCTTCCTGTTTCGAGACATCTTTTATTATGATGATGACGACAGTGAGGGAGAAGACAGAGATGAAAAAAG
Seq A exon
TTAAGCAACTGTTACTCTCTCTTGTCCATTTTTCTAGGTTTCGTTTTATTTATAGATGTCAATAAAGATATTTTCACTATTGATTTTACTAAAGAAGGGTCTGAAAATGGTAACTTACATTCTGGACATTTAAACATTGTTTCAC
Seq C2 exon
ATTTCATATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018710:ENSBTAT00000024905:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development