BtaINT0155869 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048054 | UAP1L1
Description
UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 [Source:HGNC Symbol;Acc:HGNC:28082]
Coordinates
chr11:106160391-106160974:-
Coord C1 exon
chr11:106160770-106160974
Coord A exon
chr11:106160567-106160769
Coord C2 exon
chr11:106160391-106160566
Length
203 bp
Sequences
Splice sites
5' ss Seq
CTGGTGTGC
5' ss Score
3.46
3' ss Seq
CAGCCTTGCCTCCCTTGCAGGTA
3' ss Score
10.21
Exon sequences
Seq C1 exon
GTTTCCATCAGATCGCCCTGAACAAGGTGGCCGTGCTCCTGCTGGCTGGCGGGCAGGGCACCCGCCTGGGCGTGACCTACCCCAAGGGCATGTATCAAGTGGGGCTGCCCAGCCAGAAGACCCTGTACCAACTGCAGGCAGAACGGATTCGGCGGGTGGAGCAGTTGGCCGGCGAGCGCTACGGGACCCGCTGCACTGTGCCCTG
Seq A exon
GTGTGCCCACCTGCATTCCTTTGGCCCCGGAGTGATTCCCCTCCCCTACCTTGTGTAGCCCCAGTCCTGCTCCGCACCAGGACTTGAACCCCAGCACAGTCCCAGTCAGAGCCCAGCCCCCACCCAGAGGGAGGCCTGCCAGTCCCATCTGCCAGGGGGACTAGGCCCTCTGCAAGGCTGGCTCAGCCTTGCCTCCCTTGCAG
Seq C2 exon
GTACATCATGACCAGTGAGTTCACGCTGGAGCCCACAGCCAAGTTCTTCAAGGAGCATGACTTTTTCCACTTGGATCCCAACAACGTGATCATGTTTGAACAGCGCATGCTGCCTGCTGTGTCCTTCGATGGCAGGGCCATCCTGGAGAGGAAAGACAAGGTCGCCATGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048054:ENSBTAT00000065653:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0170413=UDPGP=FE(18.1=100)
A:
NA
C2:
PF0170413=UDPGP=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATCGCCCTGAACAAGGTG
R:
GCATGCGCTGTTCAAACATGA
Band lengths:
307-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development