BtaINT0158595 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020761 | USP33
Description
Bos taurus ubiquitin specific peptidase 33 (USP33), mRNA. [Source:RefSeq mRNA;Acc:NM_001101139]
Coordinates
chr3:67205606-67212576:+
Coord C1 exon
chr3:67205606-67205714
Coord A exon
chr3:67205715-67212473
Coord C2 exon
chr3:67212474-67212576
Length
6759 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
3' ss Seq
GATTTTTTTTTCCTCTGTAGCTC
3' ss Score
9.73
Exon sequences
Seq C1 exon
GTATGGAGGAGGACCAGCCGTCAACCATCTGTACATTTGTCACACTTGCCAGATTGAAGCGGAGAAAATTGAAAAAAGAAGAAAAACTGAATTGGAAATTTTTATTCGG
Seq A exon
GTAAAAAAATGATGCTTTTCAAATTAGAAAAATGATCTAGAATAAAGAAAAAGAAGTGACCCTTAGAAAAACTCTGTAAGTGAAATGATTGGATGAAAGAGTTGTAATAGATTTTAAGTGTTATGGGCACATAACAGTGAGAGACCCCAGTAAAGTGACTGTAGTTCTAGTGAGTTAAGTTCTTCCTTTGTGGATTTTTGTTTTCATGGATTGGTAATAAATTTTGGTTTATGTATTGCCACTGGCAAGAAATCTTACTGAAATAGTCAATTATAGATTTTGATAAGCTAGTGATTTTTTCAGAAGGCATCTACTCAGATTGCATTCTCTATTTTCACCCCTTTGTAAAGTAAATATTGTTTGGGGAAGCTTTCTATACTTATACCTAGTTCCCATAAAGTGAATATATTACAAGATGTTTCTTGATTACAGGCAATAGAGAGTCTGATCACAGAATCAATAGGAAGAGCTGAATAACCAGGTTTTGTGGAGAGAAAGAATACACTTCCATTTGTCTAGGTAGCATGAAGTAAGTTTCTTCAAAGTGGTACTGTCAGTAAAATGGCTCCAACTACTTATTTACTCGAATTCCTAGTAGAGAATCCTATAGAGTTTGGGTCACTTGAGAGGCATATTCATGTATTCCTGTTCAAATTATATTTGTGGAGGGATAATTCTGTAAGGGCAAATTGAGATTCTTTTAGTAAAAGATGGGGAGAAGTTATTGAGTAGATACTATAGATGAATAGTACATTTCATGTTGTGGACACACACTTCTCTTCACACATACCTGTTTCTTTTCATAGATTTAGAGGTGTTTTTTTGTGTGTGTCCTTGCCTAAATAAAGACATTTTTACATACACAGGAGAATATTACAGGTGTGGATTGATTTATTGTTCTTGAGCCTCATTTGCTTCCTAATTATAAAGAGGCATATTTTAGTTGAATATTAAAAATAGGTCATTCCATGAATACTTAGATAGCTAATGACTGTATCCATTAGGGTTTGATCAATAGAAGCCATTCTAAGTATTTTAAGTAGAATAGGAATACAAGCAATGCAAGACTTAAGTAACTATTAAAAGAACTGGTCAGTGAAGATCAGGAAGACCATAGCTGACTTTCAGGAAATATGGAAGGTGGGTAGGCTGCCATACTAGAGATAGGAGCAGAGACAGTGGCTCACAGTGCGGTTTCAGAGCCCAGACAAGGTAAAGAAAGCTTTTTGTAGTAGTGTGGGCCTGGTCAAGGGTGTTGGAGCACAGGCAACATGGAAATGGTTTTCCATGTTGGCTGGAGATGGATATGTGAAGAGGCATAGCATAGTGGTGGTGGTAGATTTGAGGGACTGATTCCTTGTGTGGGATTGATTCCATATGTAGGATTGATCAGTGAATACAGGTATCATGAGAGCCAGATTTCTTATTGTCAGATAAAGGAGTTACAAATATTGAAAGAGAGAAAACTAAAACGGACTCTTTGTTATTGGATTAAAATTGTAGATATCTTTGTGAACTCACTGTCATAGACATGTGCATATGTGTGTGCGTGCTCCGTCATGTCGAACTCTTTGGGAACTTCTGGACTGTAGCTTGCCAGGTTCCTCTGTCCATGGGATTATCCTGGCAAGAATGCTGAAGTGGGTTGCCATTTCCTCCTCCAGGGAATCTTCCCAACCCAGGGAACGAACCCAAGTCTCTTGCGTCTCCTGCATTGCCAGGTGGATTCTTTACCACTGAGCCACCTGGGAAGGCCATACACATACATATGGAGTTATGAATGTGTGTATGTGTACATGTGTATAGAAATGAATGATGTACCTAAATTAATTTCCTAACTCTTGTCTCCGAAAAGGCCTGGATAACTCCAGTAGGATTGAGCATACCCAGCTTTTTTCAGATCTTGGCTTCTAAACATCTTTCTGTAGTCAAAGTGACCAGCCCTCCTTGGAGAAATGACTGCTTTCAGGGCTGAGGCAGGGGAATTGCAAGATGAGCTTGGAATTCCATACTGTTCCAAAAAGTTAAGAAGTCTTTGAAGAATGATGGGGAAATGTCAGAAGTACACAAAAGCCAGCTTGAAGGGACTTTTCCTTGCTGAATTTTGGATAATTTGTACTTCAAAATAGATTATAATAGTATTCAGTTCAGTTCACTTGCTCAGTCGTGTCTGACTCTCTGTGACCACATGGACTGCAGCATGCCAGGCCTCCCTGTCCATCACCAATTCATCTTCTTTAGGATGGACTGGTTAGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTTCAACACCACAGTTCAAAAGCATCAATTCTTCTGCACTCAGCTTTCTTTACTGTCCAACTCTCACATCCATACATGACTACTGGAAAAACCATAGCCTTGACTAGATGGACCTTTGCTGGCAAATAATAGTATTATATAAAGGACAGAAATGGTAGGGACCTAACAGAAGCAGAAGATATTAAAAAGAGGTGGCAAGAATACACAGAAGAACTGTGCAAAAAAGAGCTTCACGACCCAGATAATCACGATGGTGTGCTCACTTACCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGGGCCTTAGAAAGCATCACTACGAACAAAGCTAGTGGAGGTGATGGAATTCCAGTTGAGCTATTTCAAATCCTGGAAGATGATGCTGTGAAAGTGCTGCACTCCATATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTTAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGCACTCATCTCACACGGTAGTAAAGTAATGCTCAAAATTCTTCAAGCCAGGCTTCAACAGTACTTGAACCATAAACTTCCAGATGTTCAAGCTGGATTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCTGCTGGATCATGGAAAAAGCAAGAGAGTTCCAGAAAAGCATCTATTTCTGCTTTATTGACTAGGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATTCTGAAAGAGATGGGAATACCAGACCACCTGACCTGCCTCTTGAGAAACCTATATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACAACAGACTGGTTCCAAATAGGAAAAGGAGTACGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTCTTTGCAGAGTACATCATGAGTACACTGGGCTGGGAGAAGCACAAGCTGAAATCAAGATTGCTGGGAGAAATATCAATAACTTCTGATATGCAGATGATACCACCCTTATGGGAGAAAGTGAAGAGGAACTCAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAGCCAACATTCAGAAAACTAAGATCATGGCATCTGGTCCCATCACTTCATGGTAAATAGATGGGGAAACAGTGGAAACAGTGTCAGACTTTTTTGGGGGGGGCCTCCAAAAATCACTGCAGATGGTGACTGCAGTCATGAAATTAAAAGACACTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCTGTCTAATCAAGGCTATGGTTTTTCCAGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAAGCTGAGCACCGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCCAAAGGAGATCAGTCTTGGGTGTTCATTGGAAGGACTGATGCTAAAGCTGAAACTCCAATACTTTGACCACCTCATGTGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAGGAGGGGAAAGGGACGACAGAGGATGAGATGGCTGGATGGCATCACCGACTCGATGGACTGAATTTGAATGAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAATTCATGGGGTTGCAAAGATTCGGACACGACTGAGCAACTGAACTGAACTGAAAGGAAATGGGAAGTTATATGCAGCAGGTGATTCTTGGGATTTTCTCTTTTGGGGGGTGCTTTTTTGGTCATGCAGCAAGTGGGATCCTAGTTCCTGGACCAGGGATCAAACCTACGCCCCCTGAAATGGAAGTGCAGGGTCTCAATCACTGGACTGCCAGTAATCACCCAATAGGTGATTCTTCACTGGATTCTTTGACTATAAACAATATTGTTGCATCATTTAGAAAAATGATGGAGTCTGAGGATTAGATGCTAGTATTATATCAGTATTTCTAGGTTTTTATCATTTGTGTCAAATGTTTAAGAAAACCCTTTGTACAGCGTTTTGCAGACTTTAATGATCATTTCTCTGGTGTTTTGTGAAAGTTGCTCAGTCTTGACCGACTGTTTGTGACCCCATGGACTATACAGTTTGGGATATATACTGCATCATATAGGACAGTACCAGGCCCACAGTGTTTTGTCACCTAGACACAAAAACAGTATTCAGTAGGCCAGCGACTTTTAGGTGATGGTCGGTAGTAAAGAATCTGCCTGCCAATGCAGGTGACGCAGGTTCAATCCCTGGGTCGAGAAGATCCCCTGAAGAAGGAAATGACAACCCACTCCTGTGTTCTTCCTTGGATAATTCCATGGACAGAGGAGCCTAGTGGGCTACAGTCCATGGGGTTGCAAAAGAGTTGGAAATGACTTAGCTACTAAAGAACAACAACATATGGTAAAGTTAGTGAATCTTACGGATGTGAGCCCACTTCTTCGTTTATTTTATGTAAAGTTAGTTACACTGTCAGAGTAATGTGGGATGGTATATCATCTCAGTTAATGGGACAATCAGTAAGACCTGCAATGCTGATACTAGAAGAAAGTACATTAGGAAGGTAGACCCAAATCCAGTCCTGCTGCTGCTAGTCACTTCAGTCATGTCCAACTCTGTGTGACCCCGTAGACGGCAGGCTACTAGGCTCCTCTATCCCTGGGATTGTCCAGGCAAGAACACTAGAATGGGTTGCCATTTCCTTCTCCAGTGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCGGTCTTGTCCGACTCTTTGCGACTCCATGGACTGCAGCCCACCAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTATGTTACCACTGCCTTCTCCGAAATCCAGTTCTAGGCATTTGTAAATCCAGTTCTAGGCATTTGTAAATCACTTATCATCAAGGGACTTATATCCAGGTTATGTAAAGAATTCATACAACTCAAGAAGACAGATATTCCAGTTTGAAAATAAGCAAAATATTTTAATATACATTATCCTTAATATATGAGTGTTAACTAAGCATATGAATAAGTACACATTCTCATTAGTCATTAGTAAAATGCAAATTATAGCTACATTACACACTTTTTAGAATGACTGAAACAAGAGGACAATATCAAGTTCTGACAAAAATGTAGAAAACTAGAATTCTCATAAACACTGTTGGTGGGCATGTAGTGTGCCCAACAAAGAGTGCCACCAACTCTTTGTCATGCCAAATGACAACCAGCTTGAAAGTTTTTTAGAGGTTAAACAACCACTCAGCACAGGACTCAGCCTGACATGCTACATTCCATGGGGTCACAAAGAGTCGGACACAACTTAGCGACTGAACAGCAGCAGCAACACGTGACTCAGCAGTCTCATTCTTAGGTATTTACACCAGAGAAATGGGGCTTCCCTTGTGGCTCAGCTGGTAAGGAATCTGCAATGTGGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGATCCACTGGAGAGGGGAAAGGCTACCCACTCCAGTATTCTGGCCTGGAGAATTCCCTGGAATGTATAGTCCATGGGGTTGCAAAGAGTTGGATAAGACTGAGCAACTTTCACACAACACCAGAGAAATGATCATTAAAGTCTGCAAAACCGTGTACACAGATGCTCATAGCAGAATTGGTCGTAGTTGTCCCAAACTGGAAATAATTGATATACCCATCTGGTGCCAAATAGATAAACAAGATGTGGTATATCCTTACAATGGAGTACAACTACGCATAAAAAAGGTAGAGCTACTGATGCATGCATATGATGAATCTTAGAAGCATTATGCCAAGTGAAAGAAGATAAGATAAAAAATGACTATGTGATGTCTCATTCCATTTATATGAAACTTCTTTTTATAAAAAGGTAGAGTAGATCAGTGGTTTCCTGGGGCTGAGAGGAAGTGATTGATTGCAAACGGGTGCAGGGGAACTTTCTGGGGTGTCAGAAATGTTTTAATGGATTGCAGTAGTGGTTGCAGAACTATAAACAACTGAAAACCATTGAACTTTATGTTAATAGTAGGTGGATTATTCTTTAATAAAACTTTTTTATTTTTTAAAGCTGTTTTTTAAAATGCAAGTCTGTAATTATTCCATAACTCTAGGGTTTTGTCTTAAAACTCAATAGATGGATTGATTGAATGTTTATCAGGTGTTAACATGTCCTATTAAGATAACTTAGCATCAACGTACATCACATTCTTTGTGTATGAGGAATTAGCCTCATCAGATAATGAAGTAGAATGGTTGTATTCTGCTACAAAACACAAAAGTTTTGTAGTACAAAAGTTCTAGACTTTAAGTGACTGATTTTTTTTTCCTCTGTAG
Seq C2 exon
CTCAACAGAGCATTCCAAGAGGAAGACTCTCCAGCTACTTTTTATTGCATCAGTATGCAATGGTTTAGAGAATGGGAAAGTTTTGTGAAGGGTAAAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020761:ENSBTAT00000027667:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF063377=DUSP=PD(17.8=35.1)
A:
NA
C2:
PF063377=DUSP=PU(30.7=65.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]