BtaINT0158978 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019488 | USP6NL
Description
USP6 N-terminal like [Source:HGNC Symbol;Acc:HGNC:16858]
Coordinates
chr13:12823121-12825836:+
Coord C1 exon
chr13:12823121-12823220
Coord A exon
chr13:12823221-12825683
Coord C2 exon
chr13:12825684-12825836
Length
2463 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
TTTTTCTCATCTTTTCTTAGAAC
3' ss Score
10.04
Exon sequences
Seq C1 exon
ACGCCCTTTACACTAAACCTCAGAATATGGGACATCTATATCTTCGAAGGAGAGCGAGTTCTTACTGCTATGTCTTACACAATCTTAAAATTACACAGAA
Seq A exon
GTAAGAAAGCATTTAATTATAAAGATTTCACAAAAGCTAGCCTTGTTTTAAATCTTGACTTCTCGTTACCCACCCAACTTCAAGGTCATTTCTTTTTAGTAATGAGTTTAAAAATTCTTTAAAATCAGTGAAGAAATTATCTTCAGTTGGTGGTTTTCCCTCGTTGGTTCTTCGTCGTGACTAGAAGCTTACTCCTTGCAAAACTCTTAATTCTTTTCTCTGTGTCAGTTTCATCTTCACATTTAAGTTGAATGTAGTATGTTGGTTTTACTACTACTAATATTCCTACTAGTTACTTGTTTCCATGGTGTGTGTGTGGGGGGGATGTCCCTTATTTATTTATTTTTTTTCTTTGATAAGTTTAATACGAAAAGGGAGAGACCAAAGAAGCCAGGCCCTTTAGTTAACAGGTCTACAGAGGGCGTTTTCTGTGATTGCTTCACCAGGAAAAGAGCATCCAGCCCCACGCCATAGACCAGAGTTGGGGACCCTCCCCCTATCTCCCTGTCTGGCTGCTTTGTGGCCTCTGTAGCAAGTACCCTCCAGGCCCACAGTTGTCCAAATGTAGCAAAAGGCCTTCAGTTGCAATATCGCAAGGGCTTGGTAAATAGGATATGCTGTGCCTTACTCTGAAAGTCAAGAAGTGAGAGTTGCTCTTTATGAATATGAGGGACCTTATTCACCTTAAAGTCTTAAACTACCCTTAAAACTTAGGCACTCCTTTTGTGACCATGCAGAGAAGGGAAGAGAAGCTCACGTGGGTGCCCCTCAGGCAGCACCTCCCGCCTGCGGCACAGCCTGAGTTCACGCTCACTGTATACTCCGCCCGCTTGCCTTGTTCTTGAATGGTCATCTCTTCAGTTTCCCAGCTCAGTGACACATTAGCTGAGTGCTTGGGGTCCTGTTCTCTAGTTTTCCTCCCCGCTGTGGCTTTGTTCTAAGAATGTCCTTGGTACTTTGATAGGAAATGGTTTGATTGCTTACTTGAAAAGCATGGTCTTCAGGAGCACCAGATTATTCAGATTCTAGATAAGACTGAAACTTTAAAATCACATCTGTGTTGTTTACTCTGAGAGAAGAGGATTCAGAAGTCTTGAGGTTCACGTCCCTGCCTCCCCAACACCAAACCACAGCCCTAAGATGAAGCAGTTTGGCAGTGAACTGCCTCCCAAAACTCAGATCTGTGGTCATAACCGCAGGAAGTCAGTCAGTCTCCCTCCCTCCCCTCTCCCCACCATGCCCTTCTCTTCTCTCTGGATTATGAACTGACCAAGATGTAGAACAGAAGCATACTCTGTGTTAAGGTATATACTTACCAGTTGAACGTTCCTTTAGCAGTGAGAAAGCCCCATAACTCTCTCCCTCCTCTTAAATTGTGTTTCACTTACGACTCTTGATTAATTTTGACAAGTAAAAAGTTCCTCTACTCTTTGTAAATTAACCTTAAACACAACAACTACTTTAAATCCTACTATCATTAGGTTAAACTCTGGAAAGCCTTTGCTGTTGTATACTCTTTCTTCATTAGGAAGACAGAGATCAAGGACTTATATGAAGTTCCTTCATCATATAAAGCTTCTGGGCCAATAGTTACCTGAGGCTCCTAAGATTTTTTCTTGTTTTTTTTCCTGATTCCCTTACCAATATTTAGAGGCATTGTTATTTAAAAAAGAAAAATCACACTGTGACTTTAAACAGTAAAAAAAAAAAGGCAACCTAAATGCCCAGTATTAGAAGACCAATTATTCATAAATTTAGAGCATACACACAGTGGATTCTTATGCAGTTGTTAATAATGACAGCATAAAATCATACTTGTTGAAGTGAGAGGTATCAGTGATACACACCATTGACTGGGGGAAAGCAAAGAGGTGAATAATGTGTAAAGTGTCATTTACTTCTGTAAGTTGAACTGCATGTACACACATCTGCTTGTAGGACACTGGCATAGTATCAATACAGATAAAATTAATAATCCAGATTTTCAAGAAATTCAGAGAGGGGCATTGGTGGTTTAGTGGTAGAATTCTTGCCTCCGAGATTTTTGAAAAACTCTGAGACAGTTAAAATACAGACCTAGAAGTGGCTATGCCTGTGGCAGTCACAGCTGTTATCAGAAAAACACATACATCATCCTGGGTGGTCTTTGTCAGTCTCCGGTCTCTAGGAGCTCATGCTCTGGGGAAAAATAATACCCAGGTATGGTTATTCTTACACCTGTGAGAAGGTATTTAGCAGCATTCACCTTTCCCCAGTCCCCCGAGGCTACCTGCTTTTCTCTGTGAACTGCTTTTCTCTGTGCTTTAATATCAGGAAACAGTTTTGTACTAACTGAGTTTTGGTGATAGTCACAAGGCTATTTGGAAGTTGTATGTGGTGCACTCTTAAAAATAGACATCGAATAAAATACGTTTTCTTCTCAACCTAAAGTAGCCATTGTATATTTTTCTCATCTTTTCTTAG
Seq C2 exon
AACATCTTATGAGATTGTCCATGGAAGAACTTGTAGAATTTCTTCAGGAGACCTTGGCAAAGGATTTTTTCTTCGAAGATGACTTTGTAATAGAGCAGCTCCAGATTTCTATGGCAGAACTGAAGCGGGCAAAGCTCGACCTTCCAGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019488:ENSBTAT00000025957:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(15.7=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=PD(1.4=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development