BtaINT0159516 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039160 | VAV1
Description
vav 1 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12657]
Coordinates
chr7:18921798-18930571:-
Coord C1 exon
chr7:18930439-18930571
Coord A exon
chr7:18921819-18930438
Coord C2 exon
chr7:18921798-18921818
Length
8620 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTGACAACAGGGTGTTTTTTTGG
3' ss Score
-20.09
Exon sequences
Seq C1 exon
GTATGCCTTCCTGCTTGACAAAGCTCTGCTCATCTGTAAGCGCCGAGGGGACACCTACGACCTCAAGGACTTTGTGAACCTGCACAGCTTCCAGGTTCGAGATGACTCCTCCGGAGAGAGGGACAACAAGAAG
Seq A exon
GTAAGGCTCAGAGGTGGTAACTGGGAGACCCCAATGCTGGGGACCCTCAATGCCACTTGAGCTCTCTACTTGGCCCTTGGAATGCCTGTGTGTGTGTGTGTGTGATTTAGCACTGAAACATGTATATTATCATATGTGAAATAGATCACCAGTCCAAGTTCGATGCATGAAACAGGGCACTCAAAGCCGGGACCCTGGGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTTTACCCCAGCCAGTAATTAATTGTTCATTTCTCTTTAGATTCTGTACCACCCACCTCCCCCTACTCACCTCCCTCCCCCACCCACCTTCCGGACACAAGAAGCTCACTCCCTCCAAAACAGTGGTTCTCCCAGGGGCAATTCTGCCCACCAGGGTACATTTCGCAATGCCCAGGGACATTTTGTTGATCCCACCCTAGGGGGGAAGAGTGGGTGAAGGTCAGGGATGCTACCCAACTTCCTACAATGCATAGGCAGCTCCCAGGACAGAGAATGAAATGCCAATTTCAGCACTACTGATACTGAGAAACTCTGGACTCAGTTTAGCACTTGATACCAAGATAAACATCGATGGATCAACTGCCTCTTGACTTCTCCCTGCTTTTCTGGTAACCATCCCTCTATTTCCCCGGGATGAAACAGCCCTTCCCCCAGTCTAGTTCCTTTGGGTAGAGTTGACTCCCTCACCAATGCCAGGAATGGGCGTGTGATCTGGCCTGATCAATCAGACCAGGCATTCTCCCAGCAATGGGTTCAGGATTGGACATATCACCCCCTCCCCCAAATGATCATGTCCAATGAAAGAGAGAGCTGGGGTTTAGGAGCCATTAAATCGACCCTCTCATTTTCCACTGGACACAGAATTGTGGGAATAAAAATTTGGAATATCTGGACACTCATATCTACCTCCATGAGGGCAAAGAATGACTAAGATGGAGGAAAACACTTAAAAGAAAACAGAGTTAAGAGATGGAGGGCAATGGGTAGAGAGAGGAGGGTTTCTGAGACATTGTCAAGACCCTGGATCCAGCTGGACATATAGGCCTTCTCTCCCAAGCTTTTCAGTTATGTGAGGTAATAAATATTATTTTTTGACTAAGCCAGTTTCAGTTGGGTTTTCTGTCACAAGATCTAAAACTCTTGCTCGAAACTTCTGCAGATTAAGCTCACAATTTCCTCAAACCTTAAACTTCTCCAACTGAACATCCCTTATTTCTTCAAGAACACAGTTCCCCCAAGGGACCTGACTTTCATGTTCCTCTTAAAGTCCAGGTCTCAGAACACCATCCTTGATATCAGAGGAGGACAGTCCATCTCTGCAATGTAGTCAGATTGTTAGAATGTAATATAGTGAGATTGTTAGAAACCTAAATATGCCCATCCAACATACCCCCGGGTCCTCCCCACTTCCTGACACCGTTAGTTTTAGTAAGAGAGAAACAGAACTCCTTTTGGCCCCTGAAATATACCCGGACTTCCCACAGTCAGTTGGCATGTCACCTCCTCCAGGAAGCCTACCCTGATTGTTTCTGGGACTTCCCTTCTCTCTGCTCCCACAATGCCCTGGGTGCCACCCACCCATCACTGAGTGTGTTACTCTGTCATAGCTGCCTACTTCCTCATCTGTTTCCATGAGCTGCAATATGGTCTGTGTCTCATTCATTGTGGGACTCTCCATCACCCAGTGAGTGGAACGAACTAGTACAAAGAAATGCCTGTGAGGTGGGTGGCAGCCTCATCACCATTATTATTTTTGTTATCATTGCTATCATCATCGGCTTCATTTGCCCCATTTTACGGACAAGAAAACCAAACGTGAGAAAGCCGAGGCAACTGCTTGAAGTCACATAGCCTGGAACTAGTAAAGCCAGGATGATCTCAGGTAATTCATTCTCAATCACCGGTTACCAACTACCACTACCTAGTCATAAGCACTCAACAAATACCTACTCAATCAGAGATGGATCAGCAAACTCTGTAAAGAGGCAGACAGTAGTTTGGGTTTTTTTTGGCTTTGCAGGTCATAGAGTCTTTGTCGTAGGTCACAGAGAGAGAGCAGTCACAAACAATGTGACAAGTGGGCAAGACTTTGTATCAGTTAAACTCTGCTTACAAAAAGAGGCAGAGGGCTGATGGTTTCTAGGGTGCTGACCCCGTATTGAATGACTGAATGAATGAATATCTGATCAATGTTTTATTGAGCGGGGCTTCCCTGGTCGCTCAGAATCCGCCTGAGCAATGGTAAAGAATCCACCTGCCAATGTGGGAGATGAGAATTCAATCCCTGGATCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTTGCTTGGGAAATCCCAGGGGCAGAGAAGCCTGGCAGGTTATATCATCCATGGGGTCATAAATCAGTTGGACATGATTCAGCAACTAAACACCAACAACAATTTTATTAAGCACCTACTATGCGCTGAGTGCTGTCCTAAGAACTAAGGACACAATTGTGAACCAAACAGACAAAAAGCTTTCCCCTGATATTCCAATGGGGGAAGCAGATAATAACCAAATAAGCCAAAAAACTGTGGTAGGTCTGGGGCTTCCCTGGTGGTCCAATGGTTAAGAATCTGCCTTCTAACACAGGGGTCACAAGTGTGATCCCTCGTCCAGGAAGATCCTACATGCCGCAGGGCAACTAATTCACTGCCCCACAACTACTGAGCCCACGGTGCCCTGGGTTAGCCAGGGCACCACAACGCATGCCGCAACTAAGACTCGATACAGCCAAATAAGTAAATAATTTTTTTAAGTTAAAAAAAAAAATCAGTGGTAAGTCAGCAAGTGCTAAGTACTACTTTGTTGTTGTTTAGTCACTAAGTCATGTCCACCTCTTTTGTAACTGCAAGGACCATAACCCGCCAGGCTCTTCTGTCCATAGGATTTTCCAGGCGAGAATACTGGAGTGGGTTGCCATTTCCTCCCCCAGGGGATTTTCCCAACCCAGGGATCGAGCTTGCATTCCTGCATTGGCAGGCAGATTCTTCTCCCACTGAGCCACTTGGGAAGACCCACTAAGTATTACAGAGGAAAAGTTAGAAAGGGAAGAGAATGGAAGGTGTTGTGGTGGGGTGGGGGTGGGGGTGGGGGCAGACAGGGCAGGGGATGCAATTTCATATAAAGAAAGCAGCAGAAATCTCTCTGATAAGAAACCTTCAGGAGATAAGAGAACAATCAGGGTATGTATCTGAGGGGAAGAGTGATTTGTGAAGAAAGACAGCAAGTGCAAAGGCCCTGGGGCTGAATTGTACCTGGTGGGTTCTAAGAACAGTGAGGGGGCCCATGTGGCTGCAGTAGGGTGAGGGAGGAGATGAGAGCTGAGAGGCAGGCAGACACCAAATGCCGAGGCTATTATGGATCATGCTGAAGATTTTGCCTCTTGCTCCAAGGGGATCCATGCATGGGAGGGCTGAGAGCAAGGGAAGGGCTAGGGGTTTCCAGCATCCTCCCTGAAGTCCTGAAGGGTGATGTTTCCCGGTACTGGGCCCAGAGAGGAAGTCAGTGAACAGAATAGAATGGAATGGGAAAGAAGGCACGGCACGAAATATGACTCTCTCAAGCTTCCATCCCCATCAGCCCTAATGGGCGTGTTTAAATGAGGTCTTCCACCCAACCCAAGCCAACCCACTGGGCTGAGATTTCCTTGTACCCAGGCCCCACTCTGTCCCCAGATGAATCCTTCCCCATGGCTCTGGTCCATGTCCTCCTCCTTCCTCATCTCACAGAGGTTTCCTCAAAGCCAGCCCCCTCCAAAGCTACATCACTAAAGTCAGCTAGGCATTACCTAGGGGTCCTCTTGTCACTGCCTTCTCCATATGCACCCAACCCACTTCCTTGTCCTTCCTGGCACAGAGCTAAACTACATTCCTGGCCTGTCTTGCAGTTGGATGGGACCACATAACCAAGTTCTGGCCAGCAGAATAAGGATGGAGGTGATGGTGCCACTTCTGGGTCTGGTCCATGCAAACCCCCCAGGGTTTCCCTCCTCATCACTCCCTCCTTTGCCTTCTGACTCCAAGGGCTTCAGGGAGGGTGGGGCCATGAGGCAGAAGGAGCCCAGGTCCTGTAGGGACTTTGTAAAAAATGGCTGGGCTTTCCTGGTACCTCAGTGGTAAAGAATCCACCTGCCAATACAGAAGACATGGGTTCGATCTCCAGTCCAAGAAGATCCCATATGCCTTGAAGCAGCTAAGTTGGTACACCACAACTACTGAGCCTGTGTTCTAGAGCCTGAGAACCACAACTACTGAGCGTGCGAGCCCCAGAGCTTGAGTTCTGCGGCAACAGAGGCCACAGCAATGAGGAGCCCTCGCGCCACAAGAGAGTGGCCCCTGCTCACCGAAACTAGAGAAAAAGCCCGCGCAGAAACTAAGACCCAGTACAGCCTAAAAATAAATAAAGAAATAAAAGAAATATATACATATATATAAAGAAGGAATATTTTCTTAATCCCCCAGTTGACCCAAACCAGATTGTGATATAAGCCAGAAGGAAATTCTTTAAATTCACTGAAGAAATACAGTTCACTACAGCAACTAACATTTTGCACCCTGACCTATACCACATCCTACAGGCAAGCTCAGACCCACTGAAATCAAATTAGCAAAAAGAATGACTCCCATTAATTTACATGCTATCAATCATATGTCAATCACTGTGATAAAAATTTAGCCTACATTATCATGCTGAACCTTCACACAACCCTGAGATATCAATGCTGTCCACACCCTCATTTTGTAGATACGGCTCAGATAGATTAAGTCATTTTTTTCTCCAAGATCACAAGGCTACTAAGTACCTGACTTGAAATTCCGAACAGCTCAATATATAAAGAGTTCCTAAAAATCAATTTTAAAAAAGGGGGCAATAGTCCTAGAAGGGAAAAACATGGGCAAATGATATGAACAAATATTCATTTGCAGAAAGAAAATAAAAATAACTCTTATAAGAAAAGATGCTCAGTCTCAGACTAAGAGAAATGTAAACTGAGTCATAATGAGCTTCATTTATCACCCAAGTTGGCAAGACTCCAAAAGCTTAACAACTGTTGGCAAGGCAATGAAGAAACCAGCATTCTCACTGTTAGAGGTAATGTAATTGGAACAATGCATATAGGAACAATCCCATACAGAGAACAATTTGGCAAGATCTACCAAAAACACAGACTCACCTGCTTTGAGCCAAGAAACCCTTCTGAGAATTGATCCCATGGATATACTTGCTCATGTATCTGGCTGCAATAACAGCATTTATATATAACTAGATACTTTTCTATGTTCTTTATAGTAACTCATTTATCCTTCACAACAATACTTTCACATAAGGACTTATTATCTCCATTTTAGAGATGAGGAAACAGAAGCACAGAGAGGTTAAGTAACATGCCCAAGGTCACACAGTAGAGGAGCTGAAAAACAGTTCATGGACAAGGTTACTGATCACAGAAAGTGTGTCAGAACAAAAGCCTGGTTCAATACAAGTGCCCAGCAATAGGAGTGTTGGTGAAATAAACCATTTCCCAGCTGGGCCATGGAATTGAGTTTAGAGTAAGTTAACAGTAAAGATTCTAAGAGAGAGAGTAGGGGTTCTGAGGGACTTCCCTGGTGGTCCAGTGGTTAAGAGTCCATGCAGGGGGCATGGATTCGGTCCCTGATTGGGGAAGTTCCACATGCCAACACAGGGCAGCCAAAAAGGAAAGGAAAAAAAAAAAGAGTAAGGATCCTAGGGCCAGGCTGCCTAGGTTCAAATCTGTGACTTTGTCACTTTCAAGCTGGTTACCCTGGGGCTAGGGACTTAACTTGTGTGTCTCAGTTTTCCCAGATGCAGCGTGCAGATTAAGTCACTGTGTAAAAAGTGTTTAAACCAACGATCAGCTCACTTTTTCTACAAACATCTAGATAATAAATGTCTTCAGCACCATAGGCCAGATACTGTCTTCGTCAGTTACTCAAATTTAGAATTGTAACTGGAAATTGGCCATAGATAATATGTAAACAAATGGGCATGGGTGTGTGCTAATAAAACTTTATTTATAAAACATGCTGTGGTCCAGATTCAGCCCTCTTGTTGTAGTTTGCCAGGCCCTAGTTTGGAAGAATGCCTGGCATGTGGTTAGCCCAATAGAAGTAGTTTGTTTAGTAAATGGACAATCTAGAATATCCTGCAGTCAATTTTTTATACATGATCTTAGCCAAAAGGCCGAGAAATGATGCTGCAGTCATTTTTTTTTAAAGAATGGGAACACTGTATGAACTGATTTGGAAAGACAACCAAGGTAATGATTAAAGTAATGAAAGCAGGGTATAAAGATAGTATGTTCTGTCTTTCACAGAAAGAAAGGAGTGTAGTTAATAAGAACCTAAATTTCTATGTGCATAAGAAAATTCTGTAAGGATATATAGTCAGCTTAAAAAAAGTAGTCACTTATGGGGGAAAGCAGGAACTGGGTATCTGAGGAAGATGGCCAAAGGTTATATTTTTCTCTGCACACCTTTTACGTGTTTTGAACTTTGAACGATACACACATATTATTTAACTAAAGAATCAAATATTTTAAAGATTCTATCAGGCTCTCTGTCCCCCAGCACAGGGTTTCTCAAAGTCAGCCATGTTGACAGTGGGTGCATGTGTGTTCAGGCTTGTCCGACTCTTTGAGACCCCATGGGCTGTAGCCTGCCAGGCTCCCACGTCCATGGAGTTTTCCAGGCAAGAATTCTGGAGTAGGTTGCCATTTCCTCCTCCAGGGGATCTTCCCAACCCAGGGATGGAACCCACATCTCCTGTACTGGCAGGCGGATTCTTTACCACTGCTGCTGCTGTTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGTGACCCCAGGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCAGGAAATTGAAAAGTGAAAGTGAAGTCGCTCAGCCGTGTCCGCCTCCTAGCGACCCCATGGACTGTAGCCCACCAGGCCCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTGCCTTCTCCGTTTACCACTGCACCACCTTTTAATCCCACTGTTGACACTGGGGCTGGATAATTCTCTGTTGTATGTGAAATTGTCAGACGTTGCGCAGCATCCACAGTCTCTATCCACTGGATAACAGTAGCAGAAGTGACAACCCAGACTGACACTGCCGAAGGTCCCCTGCTGGGGGAGCAAAACCACCCCAGTTGAGAACCACTGCCCTAACCCAAACTCCTACAAGCTATGCTATGTTACCAACCCTCCCATTTTCCCTCATCTTTCCTAAGAAGACTTTTTAGCGAGAGTTTATCGCAGATTTGATCCCTGGGTCGGGAAGACCCCCTGGAGGAGGGCATGGCAACCCGCTCCAGTATTCTTTCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGTTACAGTCCATGGGGTCACAAAGAGTCGGACCCAACTGAAGCGACTGAGCACAGCACAGCACATCAGGTGTCGACACTATGCCGAGCGGTATTGAAATGTTAAAACAGTCCTCCCCTCAAAGGTGCCATTTTTAGCCACAGTTCACAGATGGGGAAACTGAGGTTCAGAGAGGTGAAACCAGGAAGTGGTGCAGCCGGGATCTGAGCCCAGATCTGGCGCCTCCGAGCCGCCACCACCACCACCACCTCCAGCATAAGCCCACCCCTCCTGTTCTAACCCTCCCACCCTCTCCCTTCCCTGCCTCTACTGATGGTGCCAGGGTTTATTGGCTGGGGATGAAAGCACAGAGAGGTTAAGCAACATGCCTAAGGTCACAGAGTGGAGGAACTGAAAACAAGATTCATCATCTTGGCTCCAGTGACCACCCCCATTCCCAGTATAATAAGCTCCCCAGTCCTGGTGGGATCTTTCCCACAATGACGGTCACATTCATCTCTTCCTCTCCACTTCCTCAGCTTTAAAGTTTCACATCTGCCACCCAGAATTTGGGCTCCCAGAGACAGCAAAGAGTGTCCGGTCACCCCTGTGGCCATCTGTAATGACTTCGTCCTCTCTCTGGGTCTCAGACCTCAGAGAGACCATCCAGCGCGGAGACCCACTTCAATCTGACCTCACCCATGAACTATGCCCACACAGCCAGCTCATTCACTGCCCCGCAGCACAACTATGTGGCCACTGACCTGCTCCTACCTTGGGGCCTTTGCCAGGAGCTCTGTTTCCTTAGATTCACCCAGCTCTTCCCTCACTTTGCCCAGGTCTCTACTCAAACGTCACCTCGTCAGGGAAGCCTCCCAGACCTCATATGCGAAAGTGCAGCCTCACACTCCTAAGCCCCCCTTTTTCCAGACCACCCACCACTCCGGACAACATATATGTTGCTTTATTTGCCCACTGTCAGTGTCTCCCATTAGAACATCAGCTTTTTGACAACAGGGTGTTTTTT
Seq C2 exon
TGGAGGGGCGGGGAGTACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039160:ENSBTAT00000005560:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(43.1=100)
A:
NA
C2:
PF0016924=PH=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]