BtaINT0159580 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35638422-35641444:+
Coord C1 exon
chr3:35638422-35638490
Coord A exon
chr3:35638491-35641340
Coord C2 exon
chr3:35641341-35641444
Length
2850 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CTGTTGTTTTCTTTTCTAAGGAA
3' ss Score
8.96
Exon sequences
Seq C1 exon
TATTTCATGGCACCATTGAAAAGATTTCTGACAGCAGCAGAATTTGATTCAGTATTCATCAACATTCCT
Seq A exon
GTAAGTAAAAATCACTAGTAAAAATGGAGCTACACTTCTATAAAATCTTTATTTACGTAGTGGCTCTCTACTTGAACATTATATTCTCTAAGAAATTTAACCCAATTTTCTGCCTCCTGAGTTCTTATAGTCTTATTTTCTGGAAATAACTGCCATGTCATATTGTCAACCAAAAATCAATCAAAATGTATGCTGAACACAAATGGATAAGACTCATATACTTAATTGTTTGTCATGACAAGGTAGCCCCAGTGAATCCCTGGTGTTACAGCCTCTTTGTCTCATGGGAGTTCCCTTCTGCCCCACTCCTTGCTCTCTCATTCTCCAGCCCCTCGACCCCATCTTACAGACACCGTCCTGGCTTCATCCTGCTGTTCCACTTACTGCCATTCCTACAGTTCCCTGTTCTCTGCTTTTTGGTGTTTTCTGCTTCTGGTTGTAACATAATAAACTTCCATTTCTGAAATACACTGTTTCCTTCTAATAAAATAATCTATTTTAATGATAAGATGTGAAGAACTTTTCTTCACATTTATACAATCATTACAAATTTCAGGGTACCTTACAATCCTAAAAGAATATTTACCAAGAAGCCTAGAAGCAAGCCAAGTGCAATACTGTATGCGGTCTTGCTAGGCAAGATTCAACTTCTTAGTCCTCTGGAATTGGCCTTGGTTTTAACATATAACTTTTATATACAATACATAAGCTTTGATGTACAGGCTTGCTTGTATCACCTGTGAGGTCCCTAATATTTTGATTCCTTTATATTTAGCATTGCTGTGCACAAATTGATGAACTGTGGCATGTTGTCCTTGTCCCTGATTATGGCCACATGAAGGCATTCTTATTGATTTGTAACACAGAAGGAAGAAAAAGCTCACGATTATCAAATGAATGTTTAGCATAAAACAAGCCACACAGGAGGTTCCTTAAAAAACTGGAAATAGAACTGCCATATGACCCAGCAATCCCACTGCTGGGCATACACACCGAGGAAACCAGAATTGAAAGAGACACGTGTACCCCAATGTTCATCACTGCACTGTTTATTATAGCCAGGACATGGAAGCAACCTAGATGTCACCTAGATGTCCATCAGAAAACCAATGGATAAGAAAGCTGTGGTACATATACACAATGGAGTCTTACTCAGCCATTAAAAAGAATACGTTTGAATCAGTTCTAATGAGGTGGATGAAACTGGAGCCTATTATACAGAGTGAAGTAAGCCAGAAAGAAAAACACCAATACAGTATACTAACGCATATATATGGGATTTAGAAAGATGGTAACGATAACCCTGTATGCGAGACAGCAAAAGAGACACAGATGTATAGAACAGTCTTTTGGACTCTGTGGGAGAGGGCGAGGGTGGGGTGATTTGAGAGAATAGCACTGAAACATGTATATTATCATATGTGAAACAGATTGCCAGTCCAGGTTCAATGCATGAGACAGGGTGCTCAGGGCTGGTGCACTGGGATGACCCTGAGGGATGGGATGGGGAGGAAGGTGGGAGGGGATTTAGGATGAGGAATACATGTACACCTGTGGCAGATTCATGTCAATGTATGGCAAAACCAATACAATATTGTATAGTAATTAGCCTCCATCTAAAATAAATAAATAATAAAAAAAGAGAAAACAGATAACCAACAAGGACCTACTGTATAGCACAGAGAACTATATTCAGTATTTTGGGATAATCTGTAAGGGAAAAGAATCTGTAAAAGAATATATATACGTGTGTGTGTGTGTGTGTGTATGTATAACTGAATCACTGTGCTATATACCTAAAGCTAACACAACATTGTAAATCAACTATACTTCAATAAAAAATAAATTAACAAAAAAACCAAGCCACACATTCTAGGAAGATAAGTATCAAACCAGTTATACGCAGTCAACAGAACTTAGGACCTGTTTGACAGTCCTTACTCTAATGGCTTTTCCATGCTCCTCAAAAAAGTGATAGAGGAAAAAAAATAGTGATGAGACCAACATATTTGTGCTATACTTATACCTGCTGAGGAAAGGTATGCCCTGCAGTCAATGTATGCTGCAGGCTACATGGGAAGAGGTGGTGGGAGAATTGACACTTTGACTTGAATCTCGTTTCCCAGCTGTGGTATGCATTTTACCGTCTAACTGAAAATGACTTGCTTATCAGGAAAAATGTGAAATTCTTGAGTTTTGAGTTGCCCTATTAAACGGCCTACTACAATGTATTTGCTGCTTATTTATGCCATTAGCTGTCTGGTTTCAAGTAATTTAGTCTGATGATTGTTAGCTTAGCTCCAGGACACCACTAATTGACACAAGTACAAATCTACATTTTCATGTCCCAAGGACATGAATCATTACTTTATCCTGTCAATAAAACATTAAGCATTTGGATAGTTTTATTTAAAATTTTAAAGTGATTATAAAATGAAAATGAACTGTACATATTTTAATACAAGGAATAAATTACCCTTTAATAACTAGTGAGATAATTTCTCTTTCCACAGGACACTGACATTTTGAGTCAGATCTGAAATGGCTATTTCCCATGTACATGGCCTCTCTCTTCTCTCCCTCTCTCCTTCCCTTCCCCTCTCCTCTTCTCCTGCCCTCCTTACCTTTCCGTTTCCCCTTCTCTTTTCTTCCTCTTCTCTCTCCCCTCCCTTTTCTTCCCCTCCTCTTCTTCCTCTTTTTACTGATGGGAGCAGGTTTATATATTGAGGGCATTCAGCATATCCTTGAGTGGCAAGTCTGGCAACAATAGGGATGCTGGGCTCCAGGTGATGGTTTGTTTTTTTTTGGTTCTGATTCCTAATTTCTCTTGCTGTTGTTTTCTTTTCTAAG
Seq C2 exon
GAACTTGTGAAAGTTCATCGGAACCTAATGCAAGAGATTCATGATTCCATTGTGAATAAAAATGACCAGAACTTGTATCAAGTTTTCATTAACTACAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575:ENSBTAT00000020771:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(12.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]