BtaINT0159840 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024980 | VIT
Description
vitrin [Source:HGNC Symbol;Acc:HGNC:12697]
Coordinates
chr11:19288819-19296039:+
Coord C1 exon
chr11:19288819-19288922
Coord A exon
chr11:19288923-19295812
Coord C2 exon
chr11:19295813-19296039
Length
6890 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
GAGTTTTCTTTTCCTTCCAGGCC
3' ss Score
10.11
Exon sequences
Seq C1 exon
AGACAATCCTGCTACCCAATTTAATCTCAAGACTCACATGAATTCCCAGGACGTGAAGGCAGCCATAGAGAAGATTTCTCAGAGAGGAGGGTTGTCTAATGCAG
Seq A exon
GTACATGTCTAATGTCTGTCTAATGTCCAATCCAGATTCAGACCTTCTTGCTACTATGGTTCTCCTTCTATGTGGTCGTCTGCTAGCATCCTAGATAGAAAAAGGAAAAATCCAAATAATCCGTTAAGAAATGACTCACAGAATATCTGTATCTTTCCTAAAGCATTACCGTGGACTGGGGGCAAAAATCATTATTACACTCATGCTGGAGAGTTCTTAGCAGGCCTGTTTCCTCAGGATAGCAGTTTTCTTTAGGACAAACAGCACTACTGTTATGACTACCATTACAGGTCTACAAGTCATCAACTATCTTTGTGTTTCGTGAAAAAGAAATTTTTAATGAAAATAAAATTTGGGCTTCCCTGGTGGCTCAGTGGTAAAGAATGTGCCTTCCAATGCAGGAGACATGGGTTGAGTCCACAGCTGAGCCTGTGTGCCACAACTATGGAGCCCGTGCCTAGAGCCCATGCTCTGCAGCAAGAGAACCCACTACGATGAGAAGCCCGAGCACAGCTAGAGAATAGCCTAGGCAGCAACGAAGACTCAGCACAGCCAAATAATAAATAAATAAATAAAATTTAAAAATAAATCAAATCTGTAGCTGGCTCCATTCAGGAAGCTTCACAGTGCTCCTTGGGAATTTTTCTCTAATCAGCTCCTGTTACAGTGATAACCGTGCAGAGACATGGTCTTTGTTTCCAGCTGTGTCTCCTGTGACATCTGAGCCTTCCTGGTGGTGATGGGGTGGAGTGGGAGTGGAGCACAAAAATCCCAAGGTCAAAATCTAGTCTTTAGTGGGGCAGGTGCAAAAACTCCATTTTATCAGTTCCCCAGAGGTGAGTAGGAATTAGAAGTAGTTTCACACTAACCAAGTTCAAAGGTCACTAGTGAGCCCATGCCAGTATACCAATTTATAAATGGTAGTCTGATTCTGGGCTTCCCTGGTGGCACAGAGGTAAAGAATCTGCCCGCAATGCGGGAGACAGGTTCGATTCCTGGGTGAGGAAGATCCCCTGGAGAAAAGAATGGCTAACCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGTGGGGTACAGTCTGTATTTGGGGCACTGGGAGGACTGCCCACTCCTGGGGGACCCTGTCTGGACCATCACAATCCAGGGAAATGGAGATGTGAGCCATGTTGCTTGCCATGGAATGTGCACAGGAAATACAGCTATCTTTGAAGGAGCTTCTTCAAAATTACAGTACATCTGATTTATTACTTCCCTCCCCACTTCAATGTATATCTATATAGACCAGTGCATTGGTATCTAGCAAATGAAGAGCCTTTGATCTCTGAACAATTCTAAATAAGCACCATCCAAGTCCCTTGGATCTGAGACCCCAAATCGGATATTGCCTCATCACAAACATGACAGAGTTGATATCTGATTTGTTTTCAATTTGATACTTAGATCACTGAAATTCCAGTAAGGTATCAGGAGTAAAACTCTAAAACTTCAGAAGACATCCTATGTCCTTGATGGGATTAGAGAGGTGTCTTAATAAAATCAGTGTATGTTTTTTCAGTAGGTAACATGTTCTATATCTGCCCTGTATTGATGGGGGTTTGAGTTTAGAGAACAGAACCCATGCCAGCTGATGTAAGCAGAAAGGGATTTATTTCAGGGTATGAAATGGTTTTGAGAATTAGAAGAAACGTACTCTAGGCTGTTTCAAAGATGGCTTCCAAAGGCTTCCTGCTGATCCAGGACCTCCAAGGAGCCATGCCTCTTCCAAGACCAGAAAATTGCTTTCTCAATTCTACCACTGCAGCCTCTTTAGGAATCTGCTTCAGCCAGGAAGCCATGCTGATCAGAAACTTCTGCTACAACTACCAGCTCCAAAAACATGCCTTGCTTGCTCCATTCACAGCCACAAAATACATGCTTTGCACCCTACCTTCTCAACATCAAGGAAGCTGGTCACTAATCATGGCCACCTCTGCTAACACTACCCTGGAAAAGTCAAACACTGTACAGACTTGGCTATAGAAATAGCAGAATCAAAAGTACAACCTCTACCCCATGTTCATCTTCTAAACCTCATGTGCATATCATTTCATGAAACTAAAACACATCCAGAACTCCAGCTGCAAGGAAATCTCAACAATGCAATTTTCAGATTTCTAGCCTCTGCTTTCAAGACACACTAGAAGGCTAATGGAACACGCATTGAGTGCAAATTGACTGTGGCCTCCAGATTTAAGACTGGGTGAGGTCAAGGTGATCTTCTGAGGGCTCCCTGTGCTCTGTCTACAGGCAGCTAACAGTAAACCAGAGGGGACTGCTGGGTGCCTTGGGCCTTGAAGGAAATCAGCTCTGGCTGTTAATGCAGTTCTCTGAGGTTTTCACACAGCCAGCTCACATGGGTTCTCCAAGACACTTCTCTAGCAACCAAGAATGTAACCATTTGATCCTTTCATTTGACAGATAAGATTGTACTAGTCAGTGATGCCAGGATGCTGGTCAAAACCAAAGAAGCCTTGAGTATAATGTTATAACCCTAATGTCTTAAGAAGGTAGCTCTTAACTCTTATTTAGATTGAGGATCCCTTTGAAAGCTATGGCTTTTGTGCCTAAATACTCATATACACAAAATTCAGTTATTTCAGTTCAGTCACTCAGTCGTGTCCGACTCTTTGCAACCCCATGGACCGCAGCACGCCACGCCTCCCTGTCTATCACCAACTCCAAGAGTCTACCCAAACCCATGTCCATTGAGTCGGTGATGCCATCCAACCACCTCATCCTCTGTCATCCCCTTCTCCTCCTGCTATCAATCTTTCCCAGCATCAGGATCTTTTCAAATGAGTCAGCTCTTCACATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAACATCAATGAACACCCAGGACTGATCTCCTTTAGGATGGATTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACACTTCAAAAGCATCAATTCTTCAGTGCTCAGCTTTCTTCACGGTCCAACTCTCACATCCATACATGACCACTGGAAAACCCATAGCCTTGACTAGATGGACCTTTGTTGACAAAGTAATGTCTCTGCTTTTTATTTTTTTATTTTTTTTTTGTCTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATAACTTTTCTTCCAACAAAGTAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCTGCAGTGATTTTGGAGCCCTCAAGAATAAAGTCAGCCACTGTTTCCACTGTTTACCCATCTATTTGCCATGAAGTGATGGGACCAGATGCCATGATCTTAGTTTTCTGAAGGTTGAGTTTTAAGCCAACTTTTTCACTCTCCTCTTTCACTTTCATCAAGAGGCTCATTAGTTCTTCTTCACATTCTGCCATAATGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTACCGGCAATCTTGATTCCAGCTTGTGCTTCTTCCAGCCCAGCATTTCTCATCTTGTACTCTGCATATAAGTTAAATAAACAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGATCTGCATACAGGTTTCTCAAAAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACATGTTATTGTGATCCACACAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTCTGGAACTCTATTGCTTTTTCCATGATCCAGCAGATGTTGGCAATTGGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCTTGGTTCACAAATTGCTGAAGACTGGCTAGGAGAATTTTGAGCATTACTTTACTAGCGTGTGAGATGAGTGCAATTGTGCAGTAGTTTGAGCATTCTTTGGCATTGCCCTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCAAATTTGCTGGCATATTGAATGCAGCACTTTCACAGCATCATCCTTTAGGATTTGAAAGAGCTCAACTGGAATTTCATCACCTCCACTAGTTTTGTTCGTAGTGTTGCCTCCTAAGGCCCACTTGACTTCACATTCTAGGATGTGTGGCTCTAGGTAAGTGATCAAACCATCGTGATTATCTGGATCATGAAGATCTTTTTTGTACAGTTCTTCTGTGTATTCTTGCCACTTCTTCTTAATATCTTCTTCTTCTGTTAGGTCCATACCATTTCTGTCTTTTATTGAGCCCATCTTTGCATGAAATGTTCCCTTGTATCTTTAATTTTCTTGAAGAGATCTCTAGTCTTTCCCATTCTATTGTTTTCCTCTATTTCTTTGCATTGATCACTGAGGAAGGCTTTCTTATCTCTCCTTGCTATTCTTTGGAACTCTGCATTCAAATGGATATATCTTTCCTTTTCTCCTTTGCTTTTCGCTTCTCTTGTTTTCACAGCTATTTGTAAGGCTTCTTCAGACAGCCATTTTGCTTTTTTGCATTTCTTTTTCTTGGGGATGGTCTTGCTCCCTATCTCCTGAACAATGTCACGAACCTCCGTCCATAGTTCATCAGGCACTCTGTCTATCAGATCAAGTTCCTTAAATCTATTTCTCACTTCCACTGTATAAGCATATGGGATTTGATTTAGGTCATACCTGAATACTCTAGTGGTTTTCCCTACTTTCTTCAATTAAGTCTGAATTTGGCAATAAGGAGTTCGTGATCTGAGCCACAGTCAGCTCCAGGTCTTGTTTTTGCTGCCTGTAATGAGCTTCTCCATCTTTGGCTGCAAAGAATATAATCAATCTGATTTCAGTGTTGGCCATCTGCTGATGTCCATGTGTAGAGTCTTCTCTTGTGTTGTTGGAAGAGGGTGTTTGCTATGACCAGTGCATTCTCTTGGCAAAACTCTATTAGCCTTTGCCCTGCTTCATTCTGTATTCCAAGGCCAAATTTGCCTGTTACTCCAGGTGTTTAATAACTTCCTACTTTTGCATTCAAGTCCCCTATAATGAAAAGGACATCTTTTTTGGGCGTTAGTTCTAAAAGGTCTTGTAGGTCTTCATAGAACCATTCGACTTCAGCTTCTTCAGCATTAGTGGTCGGGGCATAGACTTGGATTACTGTGATATTGAATGGTTTGCCTCGGAAACGAACAGAGATCATTCTGTCATTTTTGAGATTGCAACCAAGTACTACATTTTAGACTCTTGTTGACTATGATGGCTACTCCATTTCTTCTAAGGGATTCCTGCCCACAGTAGTAGATATAATAGTCATCTGAGTTAAATTCCCCCATTCCAGTCCATCTTAGTTCACTGATTGCTAGAATGTCGATGTTCACTCTTACCATCTCCTGTTTGACCACTTCCAATTTGCCTTGATTCGTGAATATAACATTCCAGGTTCCTATGCAATATGGCTCTTTACAGCATCAGACCCTGCTTCTATCACCAGTCACATCCACAATTGGGTATTATTTTTGCTTTGGCTCTTGATACAAAATACTGTGTATAAATTCCAGGGATTTGTGGGTCCATAGAGGCCAGGTTACGAGCCCTCCCTTTGGGGCTATCAGTCATCCCAGTTTGCCCAAGGGCATATGGGACTTTCAGTGCTAAACCTGGGAAAGTCCCAGAAAACTGGTATAGTTTCTCACCCTCCTTGATTCCAAAACTCTCCTGAGGCCCTAGACAAATGTGAAGTATATGCTTGAGAAAGGTATGCTGGGAAGCTACGTCATCCCTCCCAACTGCTGCTCTCAGTTGAGGCAGGCTGTCATCATGGAAACCTAGGCCCAGCAGTCTGGAGTGACCTATCCAGGCCCACATGGCCAGTAGAAAGCGCAGCCAGGTAGAACACATCTCTCAGTTCTTAGTGGGTGTGGTGCCTTCCAGGCCAGCCAGACCTGTGCCTCTAGTGGAAATGACACAAGATTCCATTGAATCCAGAATACACCCTTCCACACCTGGAGTGTCGGGCTCACCGCAAGCCCTCAAAGCCCAAGGAGAAGGCTACCCCACACTTTTGGAAATGGCTCAGGGGCTTACTGAGGTCAGCTCCAGCACCCAGGCAGAGAACGGACACTATTGTTCCCATGAAAAGCTTTTCTCACCTGCGTGCTGGTCTCAAAAACTTTTTATTCTTTTTTAATTTTTAAAATTGAAGTATTGTTTATGTACAGTATTGTGTTAGGTTCAGGTGCACAGCAAAGTGATTCTTTTTTTTTTTTCAGATTATTTTCCATTAGGGGTTATTACAAGATATTGAATATTGTTCTCTGTGTTTTACAGTAAATCTTTGGTGTTATCTGTTTTATGTATAGTAATTTGCATCTGTTAACCCAGTACTCCTAATTTATTCCCCCCCATTTCTTCCTTGGTAACCACGTGTTTGTTTTCTATGAGTCTGTTTCTATTTTGTATATACAGTCACTTATACTAATTTTCAGATTCCACATATGTGTTATCAAAGAATATCTGTCTTTCTCTGTCAGACTTACTTCACTTAGTATGATAATTTCTAAGTCCCTCCATGTTATTGCAAATGGTATAAAACCTTTTTAAAACAAGAGGAAATTAGAAGTTGAAGCTCAAAATGAAGCTGGGGAGGGAAATGGCTAGTGCTATAGGTTCCATAATATTGTGAATGTACTTAACACCACTGAACTGTACACCCAAAGCTAGTTAACATGATTAAAAAAAGAAAACAAGCCAATAAGGGAGGGAATGGATATTTTTCTGCACCTCTTTATGCTGCTCTCATCTGTTCCATAATCACTCCAAGCAAGAGTTTTCTTTTCCTTCCAG
Seq C2 exon
GCCGGGCCATCTCCTTTGTGACCAAGAACTTCTTTTCCAAATTTAATGGAAACAGAGGTGGTGCCCCCAACGTGGCTGTGGTGATGGTGGACGGCTGGCCCACGGACAAGGTGGAGGAGGCCTCAAGGTTGGCGAGAGAGTCAGGCGTCAACATTTTCTTCATCACCATTGAAGGTGCCTCTGAAAATGAGAAGCAGTACATGCTGGAGCCCAACTTTGCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024980:ENSBTAT00000034836:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(20.0=100)
A:
NA
C2:
PF0009223=VWA=FE(42.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development