BtaINT0160806 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40485301-40487220:-
Coord C1 exon
chr29:40487135-40487220
Coord A exon
chr29:40485398-40487134
Coord C2 exon
chr29:40485301-40485397
Length
1737 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
GAAGTTCTTCCTTCCTCCAGGCA
3' ss Score
8.73
Exon sequences
Seq C1 exon
GCTGCTCTCTTGATGACAACGGGGTTGAGTTTCCGGTTGGACAGATCTGGTCTCCCGGTGATCCCTGTGAGTTATGCATCTGCCAG
Seq A exon
GTGAATGACAACCTGCGCGCCTTCAGCTGCTTTCCCCGCCTCCCCGCCCCGGCCAGCACAGCTGCCTCTACAGAAGGGGGCCACGTCAGGCCCCATCCCCATCTCCCTTCCATGCTGTCAGCTCCTGTTTTTGTAGAAGAGCTGGGATCCAGGTTATTTTGTCCTCCGTAGATTTTCAGGACGGCAGAGCTTGGCAGTCTGTCTGTCGTAAGAGTGGAAAGTGACCCATGGTGCGTGTGAGGGGACCCGCTGGCCTAAGGGGTCAGAACTAGGATTCGTGGGAACAGGTTTTTCATGGACAGGATTAACAAAGGGAGCCAGGCAGCCCGAGGCCCAGTAGTTCAGGCCTTTTCTGTGCAACTGTGATGCTTCCTTCATTAACATCAATCCTATGACCTCACCTCTTCAGAAATGGATAAGGTGAGGGTGTGTGAGTTTGAGAGTCAGATCAACAGAAATGCAAACACAGCTATTTACCAGCACAATTGTTTTAGCTCCTGTTTGAGTACAGGTTGGCTTTCCTTTCTACTTTAAAAAATATTAAAAAAAATTTTTTTGTCTGCGCCATCTGGCATCTGGGATCTTAGTTCCTGACCAGGGATCAAACCCATGCCCCCCTGCAGTGGAAGTGACAAGTCTTAACCACAGGACCTCCAGGGAAGTCCCCAGTTTCCTCTCTACTTTGAAAGAATTTTTAGTCCCTTTGAATTTTATTTTTTAAAAATGAGGTCCCTGCACTGGCTGTGGGCTTCCCAGGTGGTGCTCGTGGTAAAGAACTTGCCTGCCAATGCAGGAGACATAAAAGACGCTGGTTCGATTCCTAGGCTGGGAAGATCCCCTGGAGGAGGGAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGATAGAGGAGCCTGGCGGGCTACAGTCTATAGGGTTACAAAGAGTTGGACACAACTGAAGCGACTCAGCACGCATGTACACACTGACTGTGTCATCAGCATCGCTGGGGGGCCTGGTAGAACCTTGGTTCTAGCTGCCCAGGCCTTGGACTCAGCATCTGCATTTTAATCCCTGGGTGACTTGGGTGTACACCAGCTCGTGAGAACCACGGCCTTCACATCCTCTTGATGCGCCATTTGTTAAAAGGCCTTAGACTCTTAAAAAACTTGGAAACACTTCATTGGAATTAGAGTGGGGAGGAAAGTTACCTCCGCTGCCTTTTTTCTCCTTCAGGACTGATCTAGGGCACTCATATTACAAGAAAATCACACAAAACTTCAGCCTCTTTTGAAAGAAAAGAAACTGTGTACGGCGCTTTCATCTTCTGAAAGACATTTCCGGTGGAATAGCTTTCTATAAAAATAGGATTTTATTGTACTCCGTAGGTTTGGGGTGAGCCAGGGTTTCAGGGAAACGCTGACAGAAGAATTTGGATGGGGTCATGGCACAGCCTTGGCTGTTGGGGGAAGGGACGGGAAGCTGAGGAGACCAGAACCCCAGCTCTGACCTTCCCCCTCTGGGGTATGGGAAGGCTTTCTGGAAGGCTCAAGCCCCCTCTCCCAAGTAGCTGGTTCTCTTTGGGGGAACCCTGATACCTCCTAGCTGCATTGTGATGCCCCTTAGGCCAGGTCCTGGCCAATTCGCAGCACTGCCCTTTCTTTTGGGGGACTGGCAGGGTGGAGTAGGGTGGGGAGGTGGGTACTGGTGTGGCAAGTGGGGTCTTGGTGAAGTTCTTCCTTCCTCCAG
Seq C2 exon
GCAGATGGCTCAGTGAGCTGCAAGAGGACAGACTGTGTGGACTCCTGCCCTCACCCGATTCGAATCCCCGGACAGTGCTGCCCAGACTGTTCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568:ENSBTAT00000028738:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(46.6=93.1)
A:
NA
C2:
PF0009313=VWC=PD(50.0=87.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCTCTTGATGACAACGGG
R:
CTGCCGAACAGTCTGGGC
Band lengths:
182-1919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]