BtaINT0160820 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021568 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr29:40493009-40494631:-
Coord C1 exon
chr29:40494538-40494631
Coord A exon
chr29:40493092-40494537
Coord C2 exon
chr29:40493009-40493091
Length
1446 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CTCCTGTTTGTCTTTCAAAGGCT
3' ss Score
9.18
Exon sequences
Seq C1 exon
GATGGGGAGGTGACCTGTGAAAAGGTGACGTGTGAAGCTGCTTGCTCCCACCCGATTCCCTCCAGAGATGGAGGGTGCTGCCCATCGTGTACAG
Seq A exon
GTGGGAGCCGGTCCAGGGAAGGCTATGAGTTTCCTGCAAGGTCCTCCCTCTTCCTTTTTCCTGCCTTTCTGCAACTGAAAAACAGTTCTCTAACTTTGATATATCACCTGAAGGGTGATCCCTGGGCCTAGCCCCCAGAGCTTCTGATTTATCAGGTGTAGGATAAGTCCTGGGAATTTGCCTGTCTCACAAGTTCCCAGGTGAAGCTAATGCTGTTGGTCCAGGGACCACACTTTGAGAACCACTGGTATCTGTGTTCCCAAGGGGAAGGTTTCATCTTAAGGACATCCTTTTTTAAGCTTTATTCATTCATTCAGCAGGTTTCTCCAGACCCAGTCTGCAGTCCCCTCCCCTGCCTCAATCCCCCTCCTAACTGCAGGAAGAGTAATTGTTCATAAATTGTATCGCTTTCCTAATTCCCTCCCACTATCTGCTGACAATTTTTAAAATTTGCTTTCATTGCTGTTAGGATAAAGACCTCAAATCGTAACAAGTCCTTCAGCAGAGTGCTTTAAAACTCACCCTGCACAGGAATTGCGGGCTTCCCAGGTGGCTTCAGTGGTAAAAGATTATGCCTGCAATGGGGGAGACCTGGGTTCTATCCCTGGGTTAGGAAGAGCCCCTGGACAAGGGAGTGGCTATCCACTCCGGTATTCTTGCCTGCAGAATTCCATGCACAAAAGAGCCTGGCGGGCTACAGTCCATGGGGTCACAAAGAGTCAGACACGACTGAGCAAATGAGCACACACACATGCACATGAATCGCTGGGGATCTTGTTAAAATGCAGATTCTCATTCAGAAGATGTAGAGAGGGGCCTGAGCTGTTACATTTCTATGAAGCTCCTGGTGATAAGATACTGATGCTGCTGTACTTTGAGCAGCAGTGAAAAAGTCTTTCTAAAGGTGACAAGGAAAATGCAACTCACTGATTTTCTTAATGATGATTGTTATCTTTTACTGTGTCTCTACTGTGTACTAAGCCCGAAATGTCAATTGCTGTCTACATTACATCTGAGGTTGTGGCTCCTTCCAGGTTCCCTGCAGGGCATGTGGTGGTGTTTCCATTTAACGAAAAAGACAACCGAGTCCCAGAGAGGTTAAGTGACACATCCAAGTCCAAGGCTACTCACGTGACAGGCCAGGTTTGGAACCTGGGGCTGTATGGCTGCCTTTCTTGCTTTATAAGAATAAAGGACCATACTTTCAACACAGTTCTGGGCTTATCAGACATGAATAGGACCTTCCCAGGGTACCATAAGTGGGTGTCTCCTGTGGTTTTCCAGGGGTCTTAGGACCCCACAATTCTGAGTACCTAGATCTGGCCACTGCTGAGGCATCCAAGCCAGTGAGAGAAGGTTCTGGGTATGTTATGCCTGGAAAAGGAACGAGACCTCCAGCTTCCTTTGAAGAGGTTTGATGCCTCCACTCCTGTTTGTCTTTCAAAG
Seq C2 exon
GCTGTTTTCACAGTGGCGTCATCCGGGCTGAAGGGGACGTTTTTTCACCTCCTAACCAAAACTGCACCGTCTGTGTCTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021568:ENSBTAT00000028738:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(52.7=90.6)
A:
NA
C2:
PF0009313=VWC=PU(47.3=92.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]