BtaINT0163477 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36371736-36372440:-
Coord C1 exon
chr25:36372299-36372440
Coord A exon
chr25:36371984-36372298
Coord C2 exon
chr25:36371736-36371983
Length
315 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
3' ss Seq
GTGCTGGCTCTTCTTGGCAGAGT
3' ss Score
6.84
Exon sequences
Seq C1 exon
GAGGGTAACGCGTGGTTCTCCAACAGCTGCTCCCAGAGGTGTACCTGCGGGGCGGGAGCCATTCAGTGCCGGCCCTTTGCCTGCCCCGAAGGCTCCCGGTGTGAGATCAACGAAGACGACAAAGAAATCTGCAAACCCTACA
Seq A exon
GTAAGGGGGCCCTTGGGAGGTGCAATCGGGGGGCGCCAAGCTGGGGGCTCTGGGGAGAGGAAGCTGTTGACGTAGACAGAGGTGGGCTCTCACCTCTTACCAGCTCCCTGATCGCCTGCAGATTCTCTCTGGGATCTACCTTCAGGGCAAAAAGAGTGAACCAGGCAAGGGAGATCCTCTCAAGCTGGGAGAGGTAGAGGGTGGAAATATCAAGTTCAGGGAATAGGAGGCACTGGGGGCAGGCGGGTGAGGGGCCCTGGGGGGCCGTTCCACTGGGCAGGGCCATTCCTCCTCAGTGCTGGCTCTTCTTGGCAG
Seq C2 exon
AGTCGGAGCGATGCACGGTTTATGGGGACCCCACTTACCGCACGTTTGATGGCCTCGGCTACCGTTTCCAGGGCCGCATGACCTACTACCTGGTCAAGACCGTGGATGTGCTCCCCACTGGCGTGGAGCCCTTCATTGTGGAGGGACGCAACAAGATGTATGCGTCTCACAACCCCGTTTTCCTGCATGAAATCATCGTGATGGTCTATGGCTACACGGTCCAGCTCCAGCACGAACTGGAGCTTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(78.6=91.7)
A:
NA
C2:
PF0009420=VWD=PU(50.3=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTCTCCAACAGCTGCTC
R:
GGACCGTGTAGCCATAGACCA
Band lengths:
353-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]