BtaINT0163482 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36368723-36369440:-
Coord C1 exon
chr25:36369301-36369440
Coord A exon
chr25:36368923-36369300
Coord C2 exon
chr25:36368723-36368922
Length
378 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CTATGACTGTGTCCTCTCAGCCT
3' ss Score
6.65
Exon sequences
Seq C1 exon
GCACTGTGTGTCTGACCTGTGTGGCACCCGCGACCCCAAGGAGCAGGAGGGGCTGCGTTGCCAGGTCCTCAGCGGGTACGCCAGCATCTGCCAGGAGGCAGGCGCCACCCCGGCCAGCTGGCGGGACCACACCCACTGCG
Seq A exon
GTGAGGCCCTGACCTGCCCCAGCAGCTGGCCCCTGACCCCCTCAGCTCTTTCCACTCCCTGTTCTGCTCTGAGCCCCCACAGCTGCCCCCACCTTGGCTTTCCCTCTTGGTTCCCCCAGCCCTAGACTCTCCCCCTTGTCAATGTCCTCCTGACCAAACCCCTTCCCTGCCCTAACCCCCATCACCCCTGCCCACTCCTTTCTGCCAAGGCCCACCTTTGATCCTCCTCATGAGTTAGTGCCACAGACAAAAAGACTCACGAAGCCGGTCCTCCCTGCCTCTAGCAAACTCTGTGCTCTGTTGGGTGACCTTCTTCTCCATACCTGGAGGGGCCTACCCCTGCTCAGCCACTTTCTGACTATGACTGTGTCCTCTCAG
Seq C2 exon
CCTTGTCATGTCCAGCCAATACTGTCTACCAGAGCTGTATGACACCCTGCCCGGCCTCCTGTGCCACGCTGGCAGCCCCCCGGGGCTGCAAGGGCCCATGTGTGGAGGGCTGTGCCAGCCTCCCGGGCTATGTCTACAGCGGAGCCCAGAGCCTCCCCCTGGCCCACTGCGGCTGCACCGAGAACGGCATCTACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(60.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.6),PF127142=TILa=PU(16.4=13.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTGTCTGACCTGTGTGG
R:
TGGTAGTAGATGCCGTTCTCG
Band lengths:
336-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]