BtaINT0163485 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36394331-36395289:-
Coord C1 exon
chr25:36395143-36395289
Coord A exon
chr25:36394603-36395142
Coord C2 exon
chr25:36394331-36394602
Length
540 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CGTTCCCTTCTTATGCCCAGAAA
3' ss Score
5.4
Exon sequences
Seq C1 exon
AGAGCTTTCCTCAGTGTGACTTTGAAGACAAGGACCACCCCTTCTGTGACTGGGTCCAGGTATTACAGGATGGCGGACGCTGGACCCAGGGAAGTGCAAATACGCTCATCCATGGCACAGGTCCCTTCGGAATCGCCCTCAGTGGAG
Seq A exon
GTGAGGAGATGGAGGAGCCCTCAAGGCAACGAGTTCCTGAATCTGCTCACAGCTAGTGGACGGGCTGGTGTGACTGACACCAGATGTAGGTGGTGAGGATCAACCAGGGGGTGTTTACTGGAAAGCGGTCATGGGGCCAGAGCTCTGGAGGCAACACAGGTAGAATGAGTTGAGGATTATTATGTTCTGGGTTCACTTGAAAACCCCCTAAAAAATCCAGGCATCGCATTTCTCATTGAGCCCAAGGCCTCAGAATCCACTGTCATTTTCGGTCAAGACATTTACTGATGTAGCCAGTACAGGAATCTGGGCTGCTGGTTTGGTTTTCCCTTTCTTTCTGATCATGCCTCCTTCCAGTGAGAAGTCAGCAAACAGCAGGAAACAAAACAAAACAACAAACAAACAAAAATGCCCGCTGCAATGTGGGGAGTGTGGGTGTTTGTGTCTGACCCCTATTTGGAAAGCAAGGTGTCGCTCAGGAAAGCACAGGCCTCGTCCGGAGGCAGCTTCTCACCTTGCCCGTTCCCTTCTTATGCCCAG
Seq C2 exon
AAAGTCACTTCGTCTACCTTGAGGCTAACAAGTTCTCCCAGGAAGGCCAGTCTTACAAACTGGTGAGCCGGCCCTTCTGTGCCCCGGGTGCCATCTGTGTGGCCTTCACCTACCACATGGATGGCCGTGGAAAGGGCACGAAGCTCAGGCTTCTGCTGGGGAGCCCTGCGGGCAGCCCCCCAAGTTCTCTCTGGGAACGAGTTGGGTCTCAGGGCCCTGACTGGCTGAACGACTCCATGACCATCCCTTCGGGACATCAACAACCTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.319
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(0.1=0.0),PF0062918=MAM=PU(26.8=88.0)
A:
NA
C2:
PF0062918=MAM=FE(54.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGACCACCCCTTCTGTGA
R:
CATGGAGTCGTTCAGCCAGTC
Band lengths:
358-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]