BtaINT0164262 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010208 | ZER1
Description
zyg-11 related, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr11:99264552-99268158:-
Coord C1 exon
chr11:99267985-99268158
Coord A exon
chr11:99264768-99267984
Coord C2 exon
chr11:99264552-99264767
Length
3217 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TGTCTCCTGGCCTCACCCAGGTC
3' ss Score
7.54
Exon sequences
Seq C1 exon
CTGGTCATCACGGCCCTCAAGTGCCACAAGTATGACAAGAACATCCAGGTGACCGGCAGCGCCGCCCTTTTCTACCTGACCAATTCCGAGTACCGCTCAGAGCAGAGCGTCAGGCTGCGCCGGCAGGTCATCCAGGTGGTGCTGAACGGCATGGAGTCCTACCAGGAGGTGACG
Seq A exon
GTGAGCCCCTGCCCGCTGCCCGCTCTGGCCCCTCGCCCTGTGTCCCGGCCTTGCCAACAGGCTCGCCGATCCCTGGGATGCCATGCTTGCTCTCCCCCTTTCTCTCCTGGCTCTGTCCCGCCCCCCTCCCAACCCCCCTTTCCCGGGGCATCACTCCCAGACTCTGGGACCGGGCATTCAGGGCCCCCTGAGCTGGCCCCACCCGAGTCTGTCTCCCACCCCGCCCTCCCCCAGGGCCCCAGGCCTTTGCTCCTGCTTGTTCCTCCGCCCTTCTTCCCAGTAATGCTCTGCTGGGTGGGTGTTTTTTTTTTTTTTTTTTCAATAGCTGCTTTTGTTTTAAAAGTAATCAAGTTTTTACTGGAGAAAAATTACAATTATGGGTATAAAGGAGGGGGGAAAAAGCCATAATTTCAGCACACAGAGATAGCCACCGTTAACATCCTTCTGGCTTTTAGTCTATGCGTAATTATTGAGTAAACAGGACCACCCTGTTTGTCTTATAACATGGGTTTTCATTTCAGCAGCATCTTGTGAATATGAATATCTCCCATATCAACAAACACTTTACAACAAAATTTGAAAAGTCATGTTTCTTTTCTTGATGACAAAAAGTGAGCTCCCTGATGCTTGGAAAACAAATTTAAGTAACAGAAAATGTCTCAGACTAACTAGAAAGTGAAAGTGCCAATCCTAGCGCTCCTCCCCCAGGGCAGCTGGTTTTAATAGTTCAGCTTCCCAACTGTTGATGTCAGCACCTGTGCAGCGCCTCCCCCAGGGAGAGGCTGCCCTGGTGCTGACTCTGCTGGGGACTTGGAGGCCGTGGCCAAGCTCCATCCCCATGGAGTAGTGGGAGAGGCTCCCCTGACTTCGTGGGCTGCACTGACTGAGTCAGCCCCACGGTTGAACATTTTAGGTTGCTGTTAACGTTTTGTTATTTCTTTTTTTTTAAATTCGAACATGCCAGCTCTTAGTTGTGATTAAGTGGGATCTCATTTGCTGTATGTGGGATTCAGTTCCCTGACCAGGGATTGAACCCAGGTCCCCTGCATTGGGAACTCAGAATCTTACCCACTGGACCACCAGGGAAGTCCCCATGTTTTGCACTTTCAAATTAGGCTTTGCTGAATACATGTAAGCCATGCTTGTTATGAGACTTGTCTAAAAGGAGAATGGCTGGAGCAGTGGGCCTGTGTATTTTTAAAGCATTTGGTATATACTCTTGCATCGTCCTCCAGAAAGGCTCTGGTGGGGATGCAGCCTCTGCAGGAATGAGGAGGCCCCCTTTCCCACTGACTCCCAACTCCAGACTTTTTCCTTTGTTGAGATAGAATTTATCATCAGGTAAAAGGGTTGTTTCTTTCCCCCTTGGCCGTGCTATGCAGCATGTGGAATCTCAGTTCCTCAACCAGGGACTGAGCCTGTGTCCTCTGCCTTGGAAGCACAGATTAACCACTGGGTCACCGGGGAGGTCCCGGGGTGCTAGTTGAAGATTTTCAAATTAATAAACTCATTCAAAGAAATAGAAATTAACAAAAACCACTATTGGCTGGGGAGATTGATGATACCCATTGACGAAGGCCAGGGGAAGAACACATTCCCGATTTCCACAGGTGAGGTATGAATCGGACAGCCTCTTCATGGGGCAGCTGGCAGAACCTGGCAAAACTGTAAGCGCACTTACCTTTTGGCCTAGGTATTCCACAGTTCAGAGATATTCATAAAGGAAAGATATATACACAGTCACCCTTTTTGATACATAGAAGTCAGAGGAAACCAAAAGCTTTCAACGATAGGGGCCTGGCCCTGCAAAGTAGTGTTAGATCCACTCACATTATGGGATGTGATGGTCAATCTGTACATCCTAACATGGAAACAGGGATGACCCTGTGGGTGGACAAGTGAAGAGACCTTCTGGACCAACGTGGATAAAACCCCTTTCACCCTTCCCCTCCCCATATTTCTATTTCCATGGGAGAGGAATCTTGATGGTTGTGCACCAAACTTTTGGTGCACAAAGGGATTACTTCTGAAGAATAAAGTGAGGGACTTTCACTTTCTGCTTGGATAATGTTATTTGAATGTTTCACATTGAGTAAGTATTGCTTCTATAATTTAAAATAATTTTTTCCCCAAAAATGTGTGTATATCATGGGGGGAAGGACAGAGTTAACAAGGGTTCGGCAGTGTTAGTCGATCAGTCATGTCCGACTCTTTGCAACGCAGTGGACTATAGCCCACCAGGCTCCTCTGTCCATGGAATTCTCCAGGCAAGAATACTGGAGTGGATCGCCATTCCCTTCTCCAGGGGGTCTTCCCGACCCAGGGATCAAACCCGGGTTGGTAATATTCTCTAATTTACATAAGTAATGAAGTGTGGTGAACTTCCAGTATTTAATGAGAAAGGATGGTGGGAAGTTAAATTATGAGAAAAATGTGCTGAGAATACTATGAAAATAAAAAAAATAACCCACAGATAACACAAAAAGAAATCAAGGAGGTGAAGCAACCGGAACTTTCCTGTGCTGCTGGTGGGAGTGTAAACTGGTACAGCCACTGTGAGAACATTCTGGAGTTAACCTGGTGAAGCTGAAGACATGCACACCTTGTTGCCCAGAAGCTCCACCCCACTTGTGGGTGGCCCTGGAGGAGCCCATACACGTGGCTGCCATGAAGTAGCCAAACACCGAAGTCTACCCAAATGTCCACCAGCAGTGGGCTGGATGAATCAATTGGGATTCTACACTGCAAATGAAAAAAAGAGAAATGCATTTCACCTACTAACGACAACGTGGTTGATCTCAGAAAGCTGCAGTGGGACAAGAAGCTACAAGTTGCTAGAGAATCTTTCGTATGCAACGGCCGGGATAGGGCCATCTCGCAGGGAGGGCTTATGATTAGGAAGGGACATACGGGGACTTCTGGCTGCTGGCAGTGTCCTTTTTCCTGACCCAGATGGTGGTTCCATGGTTGCTGAAAATTTCACTTGCTTAATTATTTGCAAAACTATTCCTTGGTATTTTACACCCACCACTCTGTATATTATAGTTCACTTTTTTCTTTAATGTTAAATAAATGGCCTCTTAGTCTCTCTCCTCTTCCAGAAAGCCTTCCTGGACTGCCACAGCTCTGGACGATCCCACACTTCTAGAGAGACTCTCGGGTCCAGCTTCCAGGGCCACCCCTGACTGTGCTCCACTTGTCTCCTGGCCTCACCCAG
Seq C2 exon
GTCCAGCGGAACTGCTGCCTGACGCTCTGCAACTTCAGCATCCCGGAGGAGCTGGAGTTCCAGTACCGTCGCGTCAACGAGCTCCTGCTCAGCATCCTCAACCCCACGCGGCAGGACGAGTCGATCCAGCGCATCGCCGTGCACCTGTGCAACGCCCTGGTCTGCCAGGTGGACAACGACCACAAGGAGGCCGTGGGCAAGATGGGCTTTGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010208:ENSBTAT00000013468:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF032249=V-ATPase_H_N=PU(32.2=81.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development