BtaINT0164376 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007122 | ZFP2
Description
Bos taurus zinc finger protein 2 homolog (mouse) (ZFP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098146]
Coordinates
chr7:2384432-2394402:-
Coord C1 exon
chr7:2394372-2394402
Coord A exon
chr7:2384529-2394371
Coord C2 exon
chr7:2384432-2384528
Length
9843 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ACATCTTTTCCTTCCCTCAGCTC
3' ss Score
10.03
Exon sequences
Seq C1 exon
CGCAGGCTGCCTTGGCTCCTTCTGGGAGAGG
Seq A exon
GTGAGTGAAGGGGCCGCGGCGGAAGCGCCCGCTCCGGAGGGTGCGCGGGGCCTTGGAGGGAGGCGTCTAGCGCAGCCAGGCGAGGCCCCTTAGGGGTGGGGCGGGCTGCTGATGGGCCGCGACCTTTCTGACCCAGCGCGGCGCCGGGCTTTTAACTCCAGGTGTGCCTCCTCTCGCCCTGGGAGCCCAGCCGGCGAGAACACCAAGAGCCGAGCGGTCGGGCGCGGTTCTTCGACCACCTGTCCCCCGAGTGGCGAGGGCAGAGAGCTCGGCTCAGGGGCCCAGCGTCGGAGGGCAAGTGAGGGGCCGAAGCCTCTGGAAGTCGCTCGGACCGTGGGTTCCTCCCCGTCGCGAGCTGTCCCCGGGACCCGCCGTGAAAATCTCGGGCGGTTCTCGACCAAGGTGCGGGTCTCGGGGCTCCAGCTCCTGCCGTTTGTGTAAACCGCATCTCGGGACCGCCCTCAGTGGTTTCCGATTCCTGGGGCGCTGGCGCGGGCCCCGCTTCACTCCTCTCTCCGTAAGAATGGGGAGGGCCATCCTATGCAGATTTCTACTTGAGGGAATCTTTTTCTTTCTTCTTTCTTTTAAAGCAGTTTTTTCCCTCTTAGCAAAAATAAAAAAGTTCAGTATAGGACAACTAGAAGGTTCAGAGGAGCAAAAAGGGAAAAATCATTTGAAAACTGTCAACATCTGCATGTCTATGTACATAGAAAAGCTTTCTAAACAAATATGTGGATATTAGTATCCTTTTCTCTATTTACTTTAAAAAATGAGTTATGAAATACATGTGCGCGAATCTTAAGCTCCGTGATTTTTTTAATAAATATTTTTATCTGTGTAGTACAACTTAAGATGCGGAATAAAGTTTTTTTAGTTTAATATTTTGAAACCATCTACTTACACTAGTTTTTAAGAACAGCTAAGTCAGCTTATTAATGAATATGAGGAAAAGTAAGTCCGTGCCATGCTTAATCCTCTCTGTAGGGCTTAGTGTTCCTTCTCAGGGTTGTTGTGGGCTTTTTTTGATTGTTTGTTTAGTATTATAAACAATAAAGGCCATCTGGCTACATTTATCTTTGCATTCTTATCTCATTCTGTAAATCTTCTCAAGTGAAATTTCTAAATCATACTGTAAAGTTTTTGATAGCTTCTGTCCTGTTCTCTCTAGAACAGTAGTAGTTTATAAACATTGCAAGGTAAGGGTACCTTACTGACACACAGTTAAGTCTGAGTGTTACTGTTCTCTAACTTCCTGAGAGGTGCAAACAATAAGGTGCACCTATTTGCATTTTGAAAGCCAGTGAATATTTTTAGGCAGTTTGCATTGTGTTTTTAAATCGTGTGTCTGATACACAAATATATTTTCAATTTCTATGCAGAAATGTTGCCTTTTTATATGTTTAGACGTGCAAACCTTCCCTTCATGTTTGGGTCTTTGACATCATTGTTAGGGAGTCTTTTATTCCATATGTCACAAGATATTCATCTGCATTTTCTTCTAGTACTTTAGTTTCACTTTATGTGCAAATTTTTATTCTTTTCCAAATGGTAAGCTCTTGTTCTGAGTTATTGAATCATTCATCCTTTCTGTGGTGACCCAAGGACAAAAGAGCTGATAAAACCAAAGAGGGTCTTAGAATGCAGGAACAGAAAATCCGGACCCTTATCGTCCTTCCTTCCCCCATGTTGTAACTAATAATGGATTTCAGGTCCTCCTAAGCAGTATAGCCTGTCTCCCCTCCTACCCTATAGACAGAGGGTATTTGCCTTACTCTCCATCCCCCCGCCCACCCAGTAAATGACCCGCAAAACCCCATTCCACTCCTTGTACCCTGGGTATGAAAGTGGACTCAGGACCCCTGTTCAAGGTCGGTTCTCCCTTGAGCTGGCCCACTGTTCTAACAGCATCTCCCACTCTAATAAATTTTATTTCCCTCTCTTTCTGTCTCATGTCTGGAAATTCTTTTCCAACCCACACTTGGACCACGACAGTTTTGGTGGCCCATATGGGGACCTTTAGGCCTCTTCCCCCACCTCCTCTCTTCTTTCTCATAGGGACCCTCTGCAAACAGGCAAGTGCTGTGGAAGCAACTGAAGAACTCTGGCCAGGGTTACCCTCTGGTGTGTTCCAAAGGCCCCACTGTTCACTGCACCCCAGTAGCAGCCGCCCAAATGGGTGAGGGTCTCTCCTTTGTCTTCTTTCCAACTGAGGACTAGGCCAACCAATATTGTGTGCATGGGTCAGGCACTTAAAAGCCATTAGGGCACCTGCCACATGAAGACTCCCATGTGAGGATAAGGGGGACACGGAACGGATCCGGCCACAAGGGCATCCGCCAGCAGCAAGACAATTTCCATGTGCCGTGTCAGGCACGTAGTGATTGAAGGAAAACAGAGACCATTGTCCCCTGGCCACCGCCTCCCCAATAGGATTGTAAGGCATCTTCCTTTTCAGCCTTCTTCCCTGTCACTTTCACTTCTTTCCCTTTCAGTCCAGATTGATTTACAGGAGCCTAGGTGTTGCTTCTGAGCCATCCCAAGAGTGGCTTCCACGTTTCAAGGAATCGCCAGTGAGTCACCCAGTTGCTCCCAGGAATCTCTGTATATCTGGGATCCTCTCTCAGACTCACCCCTTGGCTACATTCTCAGAAACTGGAAAATTTTGACCCTGCAGAAGACCTGGCCCCAGTACAAACTGGGGGACCCAAAAAAAATATGGCCTCTGAATGGCACACTAGCTTTTGCCAAAAGCAGGGAAAGGACTCAGAATTTCTTTATGTTCTGTTGCCTCCCTGTCTCCTGTCCCCCTCTGCCTCTCTCCGTCAGATTTCCTAGATGACCCCTACTCGACCTTTCATATCCACATGACCTCTTGGAAAGGATTCTGAGGTTCCCTTTGGTCCAGGTCTTTCCCTATATTCAAAAGCCTGAAGGATCAAAAACTCTCCTAACATTCTAAAGAATCCCCTTCTAACTACACTTATCTCTCAGGTGGGGAGGGAACCAAGCTTCCCCTACTCCTGAACATCCTAAAGAATTCCCTTCTAACTACTCTCGTTTCTCAGGATGGGGAAGGACCAAGCCTCCCCCTGCAAATTCCCTTAACCCTTCATATTCTTCTGATGGGACAAAGACCTCACTTCCCATCAGAGGGACAATCCAACATTTTTATCAGCTGATCCTCCCCTGATATCAGAGTTAATTTGAGCACTATTTGGTCTATATTTTAGCTATAAAACTATGACTAAGCAACCCTCTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGCCCATAGGGTCACGAAGAGTCGGACACGACTCTTCCTTTCACTTTTCATTTTCATGCATTGGAGAAGGAAATGGCAACCCACTACAGTATTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCGTCTACGTCTATGGGGTCGCACAGAGTCCGACATGACTGAAGTGACTTAGCAGCAGCAGCAGCTTATTAAAGGGCCTGCCTAGGGAAAAGCTTAAAGTTAACTCTTTCCATGTCCTTGAAATACACAGCCCACTTTACCTGAGACCTCAACCTTGGGCAAATTAGAATTTTTTAAAAAGGGGGTGGGGGGAGGAAATCAAAGAGACATTTTAAATCTCAAGTGGAAAACTGCGATCTCTGTATTTATGTATGTCTCAGTGTGTGTCGTTTGGGTTTTTTTGATAATGTTGCTGAAGTTGTACATGAGTTCTAATTTAATTGGCCTAAAGAAAAGTAAGCACTTACAAATCAAACAATTCTAAATACAAAGGAAGTTAACTTAAATGAATTTCAGATTCACGTGAACTGGGAAATATGCAATATTAAATATCTAGTATTAATGTTTGTTTGCTAATCTGATATAGACATATCTAAGAGTCATTAACATTAAGCATAATATTTCCTTTGTGCCTAGGTTTATTATAAGTTAAATATTGTTATATTGTTGTATCTGTTACAAGTTTGTCAACAAGAAAAGTACCTGTAGGGAAAAAAAAAAAACTGAAAAATGTAAATGAGATATGAGCTTTTAGATAAACTAGTAAGAATAATTATACTTTAGAAATGTCTGTCTAAAACAGCAGTCTCTCTAGATTTTGGTAACCTGAATTTCTAGGGTTGTGCTAAACTAAGTGATGGAAGTTTATTGAATAGCTAGGTCATTTCCAAATAAACTAAGATTCTGAAACATTCATTACTGAACACTAACTTCCTCTTACAGAGAAACTAGTGATTTTGGACTTTTATTGAATAATGTTTGATGCCATCCTGAGATGTTCTCTAGAATTTTTTTTAGAATTTATCACTGGTATTTATGTTCACCAATCTATAGAATGCTAATATAAAGGTCAGTTCTTGGTTGCTTAAGGAAAGTAGGATGTGTGTTTTCAGTAAAGAAGGTGTGAGGAATGAAATTACATTTTATGAAGGGAAAAGGAAGTAGGTCTGACTTAACTGGTGACTGTTTCAGGATGGGAGAACAAAGTAATGGGTACAGAAAGTGATAAGAAGGTTTTATGGAAAGTGGACCCCAAGGGAAGAGTTTTGTTTTCTTGAGATGTTGAACTGCCTTTGGTAATGGATTTTATGTTTTTTTTCCCCTGAAGTGATCTGTTCTATGTTTACCTTTGAAATCTTTTGTTAACTTTGGCTAAGTGAATAACTGTTGTTTCACTGTGACTTATATGATCCTATCTGACTGAGTGTTATAAACCCTTTTGATATTTATTGAAAACACTTCCTAAATCATTTGACTTCTAGCTAACTTTGGGATGCTTCAGAGGGCCCCTGAGACATCCCAAAGAGAGATATTAAACTACCTGAGTTCATTTGACATGTTAAATTACATGGGAAGTATTGCTAGAAGAGTGATGAATCATCTCAGGTTATAGTGTATGGTTGATGTTACTAATACAGATATCCTAGAAATTAAGTGAAATTCATGAAAATCTGATATGTCCTGATAAAATATCATTATAATTCAAGTTATCATGTTACAAGTGTTACAAGTCACAGCAATGACCAGGCTCCATTGTCAATTGCAATTTAATCAGATTTTAAACATGCCTTCCATGGTTTCATCCTGATGCCTTTGCAAGAATCCTGCTACTTCAAGATTTATGGAAAAGACTTTTCTAAGATTAAGCGATAAACAAATTTTGTTTGTTATCTGGTAAACTGGTAACAGACTGGCATTTAGTCTACTCTCTATGTTAAGAGAACAAAGCTTTCCTAGAATGAAGTTTCTGATAACAGATTATCAATTTCTTTGCCTTTAAGTGGTTTATATTTGTTTTTAAAATCTTTTGTTACTTTGGTAAATAAACATTATTTAAGATTACGGTGCATGTAGACAAAGCTCATTCTGCTTCTACAAAAAATAAGCCCTCACGGTTAGACTTTTGCTATCCTGATGTCCTTAAAACATGGCAACAGTCTACTCCTAAATCGGGGGATTAAAAATGGGTGAACAGTAGCTGTAAATCAAGGAGTCAGAGCTATGGGAAATCCAAGATGGCTGCTTGGCTTTTCGAGGCTCCCTGACAAGTCTCATTTTTATTTGATGGGTTAAAGCCTTCCCTGCCTACAGGGCTAATGCCCTCACGATGACAAAAAAATTATATTTCACTTAATATTAAGTTCTAGTTTTGTTAATTAAAGTCTGTGTTTACTTCCGAGTTAGTTCCTTGTTGTTATGTTATATTGCTAAAAGGTTTAATTAATTAAGTTATTAAAAAGGACACTCTAAGTTTGTTTCTAAAGCTTATCTCAGTAACCAATCTTTGGATAAAGGTCAGATGCTCCATGATGTACAACCAGGAGATTCACACCTGGATATAATTATTTAACTAAGTCAGATGACCTGTGTATACTGGACTCTACCTAACGAAAGTTCTTGACTTATAATTCTTACTTATGACCTTACTAATAACCGCTAGCTTTGTTATTTTCTATGTTGCTTGTTTCAGATGATTGTTTCTTATATTACTAAATGTGTGACTGAGCCTGTGATAAAATGCTGATATGCAGTTCCATATAAGATCAATGATTATAATAATGTAACTCTAGATATGGGAAGAAGCAACAAGAGGGAATCATTTCCTGGACCAAGAGGCTAGTAAGACAGGTATGGTCCAGAGACTTTTGCTACTTGCAAGGTCTGGTCCCGTAACAGCACACTTGAGCAGACTGTTGCCGGGGTCCAGCCCCAGCAGGATCCAGGGGTGCCCTCAGGATGACGGCCTAGGCGATAAGGAAAGTAAAAAGAGAGAAAAAGAGGCTTGATCTTCCTTGATTAACACGGAAAGCCAATAAAGCTTCTGTGTTCCAAGGAGTCATCCTGAAAGAAGAACAGAGAGAGAAAAGGAGAGAAAAGGAAAAAAAGAACGACATGGGGAGACCAAGCTTCGGTGAGCGAGGCCCATAACTTTATTTTCAAAAGGAACTTTTATACCTTGACTTGTACATAGAGGGAAATGAAAGATGCAAAGTCATACAGAGTCAGGCCAAACATTACATCTGTTTTGTCTTTATCAAAACCAGGATTTTTTCTGCACACCTTTCCCATAAACAATGTTGTGTACAATATCTTCTGGCCTTGGAGGCCTGTGGACATTTTATGACCCTTTTTTGATATAGGCTGCTCACCCAGAAAACTTATCTTCCCTTGGAGTGTTTTTTCTTTATATTTCTAATCTATGTCAGCCTCAGAAAGTGCTAAACAGAGTTACATTCTCACAGAGCAAAGGTGCAGTAAGTTACAACAAAGGAAGAACCAAGCAGCTCAAAGGTCTGATGTGGTTAATTCCAAGGCTGCTACTTGTTTTTCTTACATTCCAACTATGTTAACCAATGCACTCCCAGGTGCACAATGGATAAGGGATATGGGAACTTGGCAGCAAGCATTGGCTCAACAATGAAACCCTTTACCAGTACTATCTATTTTAATAATTTTTCATCCCTTAAAGGACTCTATGCTCATTAGGACTTTTGTGAACAATCATGTGTGTTAATTGCAAGAGTATGGATAAACCTGTCAGGCAAGCTAGAATGCCAACAGAGGGGTTAAAATAGAAATATTCCTTTCATGCTCAGGAGACTTATTAACCAAAGCCCTAAGTTGATTTTTTCCAGAGAAAGGTGGTCTGGGACAGCCCCCTGTTAATGTCAGAAGAGTTGGTGAAAGGCACAAAATAGTAAGACAGATTCTGGTTTGGGGGTAGGTGCTCGAGCAGATTCAGGGGGTCCCTTGAGGCCTGATCCGCCTTTGCCTGTCAGGTCTCTTCCGCATGACCTTTGTCATGGGTGGGATCTCCCGTGGTGGCTCCCAGCAGACTGTCTGTGGAATCTTTGGTAGACTTGAGAATGAGCCTTCCCAGCACCGCGGGACACAACAGCCATGAAATGCCCCCAAAGCATAGTCAAATATGTGGCCGTGTAGGGACCCTGCTGACTGGAAGTTGGCACCTGCCAGCTGCTTCTACAAAGATTACATCATGACCACTGCAAGCTGCTGGGCTTCAACACCCCCTGAAAGGAGTTCAGGGTGGAGATCAGAAATAAGGCACTCTGCTCTGGGAAAAACCCAGAAGACCCGGCCTTCAGATGATCGGATGTTTTCAGGTAAAGATTCTATGAGCCCCAATTCTTGCATCTTCTCATACCCAGAGAAATACGAACGTCGCGAACCAGTGCCTAGTCCGGTCTCTCCTGGCTAGCTCCTCAGCAGCGTTTCTACTTCTGTTAATCTTTGGGCCACGCACCTCTAACTTCCGTGTTAAGTTTGTTTCTTCTAGAATACAAGACATCTCCAAGTAATAGTATGACAAGAATATACCCTGACCAACACCCAGACAATGCTGAAACAAGCCGCCTTATCATTCCGTGGACTCTCCTCTCCCTCTGTAAATGTACCCTGAAAGAGAGCAGGCAAAAGGGAACCGAGAGCCCCATGACGACCCTGTACAGCCTGAAGAAGTCAGAGCGGTCATCGCCTCTTTTCCTTTGAGACTGGTTTCCAAAACTCCTGAGAAGGGAAATAGGTAGATAGTTAGATATGAGCAGGGTATCAACAGGGGCCAAAGAAATGGCCCTAAAAATAAAGAGAGGGGGGAATGTGGTAGCACAGGGACAAAAGAGCAGATAAAACCAAAGAGGGTCTTGGAATGCAGGAACAGAAAAACCAGACCCTTATTGTCCTTCCCTCCCCCATGTTGTAACTATTAATGGATTTCAGGTCCTCCTGAAATATATATAACCTGTCTCCCCTCCTACCCCTTAGAGAGAGAGGGTATTTGCCTTACTCTCCACCCACCCAGTATATGTGCCTCATCCCATCAGCAAATGACCCGCAAGACCCCCATCCCACGCCTTGCAGCCTGGGTATAAAAGTGAACTAAGGACCCCTGTTCAAGGTTGGTTCTCCCTTGAGCTGGGCCACTGTTGTAACAGTGTCTCCCACTCTAATAAACTTTATTTCCCTCTCATTCTGTCTCATGTCTGGAAATTCTTTTCCAACCTGTGCTCACACCACGACATTTTCTTCATTGATGTGAACTGTCACATTTTTTCATATCCTGAATTCTTATGTATAAACTTTTTCCTGAACTGTTTGTGTTGCTAGGATTTTAGTGTATTCCACTGACCCTTTTCCCTGTTAGACTATAACATCCATGAGGGTAGAGAGTTTATTTTGTTTGCCCTAAGAATAGGTGCCTGGTACACAGTAGGTGGTCAACAGTATATCTGGTGAATGAGTGACTCTCCCTACGAAGTAACACTGTTCTGATTTTGTGTATGTGGTCAGTCAGGTCCAATTCTTTGTGATCCCGTGGACTATAGCCTGCTAGGCTTCTCTGTCAATGGGATTTTCCCGGCAAGAATACTGGACTGGCTTGCCATTTCCTCCTCCAGGGAATTGTATAATATTTGGAGGGCAAGTTTGCTATTCCCTTTCAGAAATTTCCTGGCTATTGTTTAATAACACACTTAACTTAAAAAAAAAGTCATCTTTTCTGCAATTAACCTCTCAAGATTATTATTTAGGTATAACTTGGTTGGGAATGTGTTAAGTTCATAAATTAATTTCAAAGAAGTGACAACTTAGGATATTGTGACATCTTATCCAGGAAGATGGTATGTCTCTCTTTGTTCAGCTTTCTTTAAATAAGTTTAATCAGTAAATTAAATGGTATTTTTTTATGGTATTCTTCACATAAATACCATATACTTCTTACTTGGCTTATCTGTAGGTATTGTAGAAAAAAAAAATTCACAACCTAAAAGTTGGGACTTATGTTTTATTCAGCAGAAATTTTTATGACCTCATGCTCAAGCCTGGGAGGCAGCGTCTATCTCAAGAAACCCTGAGAAAACTGCTCTGAGGAGGCTGGGGAGGAGCCAGGGTATATAGGAGTTTTGCCACAAAGGGCAGGTAGTCTGAATGTCAAAAGATGATTGTTAATTAAAGAAAACTGGATATCTCAAGGAATTGAGCACTTTTCTATGTATGGGAAGATGCGATATGCTCCTTGGCTGCCTGGGGCCAGTGTCCTGTGTTTTCACAGCCTGAGTTTCCTCAAGGCTCACTGTGGGGAGGGGCTGAAGTCTGATGACTGCTAGACGCAGGTATCCTTTCTTTCCTGAGTTCCCCTCCAGGCTCCCCAGCTCACTGGTGGCAGATGCAACCCTGATAACTATAATATCCTTTGTTTACTGATGTGGCAGGCAATATTCCATTTCTCAGTAATTTTTTTTTTTTGGCAGGAGTCTTGTTTCTCACATCTTTTCCTTCCCTCAG
Seq C2 exon
CTCCATATTCTCTGGATCCTGCCAATCCCCTGGGAAGGACACCACAGGAAGGAAGGAGAAGGCAATGGCTGCTGGGCCTCTACTTTGGGGAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007122:ENSBTAT00000009371:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]