BtaINT0164627 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016757 | ZKSCAN1
Description
zinc finger with KRAB and SCAN domains 1 [Source:HGNC Symbol;Acc:HGNC:13101]
Coordinates
chr25:36944659-36945144:-
Coord C1 exon
chr25:36945053-36945144
Coord A exon
chr25:36944786-36945052
Coord C2 exon
chr25:36944659-36944785
Length
267 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGGATCTCGTGTTATTTCAGGCA
3' ss Score
5.39
Exon sequences
Seq C1 exon
CTCTCCCTGCCACCCACGTTCCTGCCCCTCATCCTGAGGGGGCTCCCAGAGACCAGGCGATGGCATCTGCATTGTTCTCGGCAGATTCCCAG
Seq A exon
GTGAGCTGTGGGCCCCTCTGCCCTCCTGAGTCCCTGCCATCTGCCTCTTGCTGGGGCTCTTCTGGCGGTCTTCTCCCAAGGCGCTGGCTGTTGAAGCCCGGGCCCACAGAATAGCCCCCACTCCCCGAGAGTCCACTGGAGCCTAGCGTGGCTGCCTTTTCTTCCCAGCATCCTTTAGGTTTGCAGTCACCCTGACTGCAGGTTCGGGCAGTGGGACTGTCCCTGGGCTTTGGGGGAACTGAGTGTGGGGATCTCGTGTTATTTCAG
Seq C2 exon
GCAATGGTGAAGATCGAGGACATGGCCGTGTCCCTCATCCTGGAGGAATGGGGATGTCAGAACCTGGCTCGGAGGAATCTCAATAGGGACACCAGGCAGGAGAATTATGGGAACGTGATTTCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016757:ENSBTAT00000029042:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=NA C2=0.535
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCTGCCACCCACG
R:
AATCACGTTCCCATAATTCTCCTGC
Band lengths:
212-479
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]