BtaINT0164914 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004620 | ZNF133
Description
Bos taurus zinc finger protein 133 (ZNF133), mRNA. [Source:RefSeq mRNA;Acc:NM_001110090]
Coordinates
chr13:38708011-38709404:+
Coord C1 exon
chr13:38708011-38708109
Coord A exon
chr13:38708110-38709228
Coord C2 exon
chr13:38709229-38709404
Length
1119 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AGCCTTTTCTTCTGTGACAGGTC
3' ss Score
9.4
Exon sequences
Seq C1 exon
TGGCCCAGCTGGTGGCTGGAGTGACCCCTTGATCCTCGCTGGTGAGTGTGGCGCTCGTGGGGCTCTAAGCTGCAGCCGTGCTCTTCCCTGCGCGGAAAG
Seq A exon
GTAGGTCCTGAAAGTCTGGGCTGTTGGCTGGGCCTGACGCTGGGGACTGTGCGGGTGCCGGGCAGAGGAGGCGGCGGCGGGACGCACTGTCGCGGTTCAGGCCGTGCCCTCCCGGATGTCATATTTGGGATGTGAGCGCGCATCTTCGATGGACGTGAGCGAAGCTCAGCCGTCATGCCCAGTGGTGGCGGATGCCGGAATCCAGCCACGTCCCGGGGCTTCTGTGGGTGAGGACACGTTAGGCCTTGGCCGAAAGAGTGATGATGATGGGAGCGGGGAGGTCGCGCTTATCCTCAAGTCCCTGGGGGCCAGAGGGTTGAGTAAGTTGGCATGGGGCCCTGATGTTTCCCAGCTGCCGGGATGAGGGCCAGCCCGCCGCCAGGAGTTTTGGTGGGTGGTTTGCCGTGGGCATCATGTGCCTGGGATGGGCTGGGTGTGGAACGGGCCACTTTGGCAGCGATCTTGGGTGTGTTTTTGGCCGGTCGCCCCTGGATTCAGGCCTTGGAGGAAGAGGTTGTCTGAGGCCCACTGGGCAAGTTTCTCAAAGGTCCTGGAAACCTGCGTTGACCCCAGCAGTCACGGATGTGCGGGGCTCCAGTGTTTCCGGACTTCGGGATTTTGAGTTCCATTTTAAAGTTTTATTAAGGAGAGATTTTGGACAGAAATAAATAGAACTCTACAGACCCACCATCCAGATGTAACCCTTGTCACCTGGGGAGCAATCTTGATTCATCTCAAAATGGCACACTGAGAAGCCTACAACCCACAGAGGTTCACTGTCCCTGCCCTACTTGAAGAGCTGCCAGCTTCATCCAGACTCTGTGACTTTGTAACGGTGTCACCTTGGATAAGGGACTGACTTCACTGTGCTTCAGTTTTCTCATCTGTAAAATAAAGATAATAAATCGTACTCCATTGGATTGTGAGGCTAGAATGAAGTAAGATGGTTCTGTGCCTGGAACTGTCTCTGATGTGTACAGTCCTAAGTACCCAGTCAGTAAGAACTTTGCTTAGGAAGGTCTGAGGCAAGAGTGGGTCAGCTCAGGCCTGGTGTCGGCAGCATTATTGGGGCAGGCTGTGTTCTCAGCGAGCTTCCCGCAGCCTTTTCTTCTGTGACAG
Seq C2 exon
GTCCATTCCTGATGCCTTTAACGAAGAGGGAAGTCTAAGGGCGTGAGTTTCCAGTGACTCTCCTGAACCTTTCTGCTCTTGTGCTGCCCAGAGAGGAAGCCTGGTGGGCGAGGGGAGGGCTCCTGACAGCCCGGACTCACGTGGGGACTGCTCGCCTTCCGTGTGCTGAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004620:ENSBTAT00000039401:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGAGTGACCCCTTGATC
R:
CTTTGGTTCAGCACACGGAAG
Band lengths:
262-1381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development