BtaINT0165001 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015348 | ZNF189
Description
Bos taurus zinc finger protein 189 (ZNF189), mRNA. [Source:RefSeq mRNA;Acc:NM_001099113]
Coordinates
chr8:92751543-92752502:+
Coord C1 exon
chr8:92751543-92751725
Coord A exon
chr8:92751726-92752417
Coord C2 exon
chr8:92752418-92752502
Length
692 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TGGCTGTGTTTTTTACCCAGGAG
3' ss Score
7.68
Exon sequences
Seq C1 exon
GGTCGTGACCGCTCGGGGCAGGACCTGGCCAGATCCAGCCTAGAGGCCTCACTTTCTTCGGGCCTAATATTCAGCGGCCGGGTAGGCCTTGCCAGGGCCTCCTTTTCGTGCGGCCACCCGGGATTCCTGCCCTGATTTTCTGTCTAAGAGATGGCCTCGCCGAGTCCCCCGCCACAGCCAAAG
Seq A exon
GTAAGTCGCCCCTCGGAGTATTCCTGTTCTCTCGCCTTTACCTAGCTCGCTAGGCCGCGCCACCGCCCCCACCCCCCTTTTCGGGTCTTTAGGGCCAGCGCGGTGCAATGAAGTACCCTCTAATGTACTGGGGAGCCCTTCGCGATCACACTGCCCAGTGGCTCCTTTTTTCAAGAGCGACTTGATAAATCTAAAGAAAATTAGTAATGCTCCAAACTAGCGTTTTCATTTATGAGTTCTTCCAGGTGAGGTTATTCTACACCTGCCCCATGCCTGGATCCAAAGTAGACGCTTAGAAAAATTAACATAATTGAGTTGAAAAGGGTCGTAATTGAGTTGGAACGGGATGAGGAGGTGCAGGAAACTTGGGAAGGCCTCAGTGCAGCTTACTAAAAGTAAATTATTAGGGCATACTGGGTAAACCTTATCCATAAGCTCCTCACTACAGAGGACAGAGATCCAGCTGTGTTTTCCTCTAATTTGAGGTGTCCGAATTCTGTCTGTTCCCAGAATTGAGTCTCATTTGTAACTCTTAGTTATCATGTTCCTCCTAGCCTACTCGGCCCTGATAAGTGGTTGTTTCTGCTACTTTCAGCGGTAGAATTGTCCTTGAGACAACAAAACTGACTACAGAAATCATACTATTTCAGGGCTTGCTGACATTTGAGGATGTGGCTGTGTTTTTTACCCAG
Seq C2 exon
GAGGAGTGGGATTATCTGGATCCAGCTCAGAGAAGCCTGTATAAAGATGTCATGATGGAGAATTATGGAAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015348:ENSBTAT00000020403:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.328
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=FE(93.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACCTGGCCAGATCCA
R:
CCAGTGAGACCAGGTTTCCAT
Band lengths:
250-942
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]